Evidence map›Paper›PMID 27058789›Full record

ArticleMolecular cell2016

Multiple Parallel Pathways of Translation Initiation on the CrPV IRES.

Alexey Petrov, Rosslyn Grosely, Jin Chen, Seán E O'Leary, Joseph D Puglisi

Abstract read
In one paragraph

Article in Molecular cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. RNAViruses · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexey PetrovDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Rosslyn GroselyDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Jin ChenDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA; Department of Applied Physics, Stanford University, Stanford, CA 94305-4090, USA.
Seán E O'LearyDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA.
Joseph D PuglisiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305-5126, USA. Electronic address: puglisi@stanford.edu.

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
The PIP2-virus interface and PI 4-kinase: novel biology and validation targetsR01AI099245 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2012 to 2016
$5.2M
Single molecule translational profilingR01GM099687 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2011 to 2015
$4.3M
THE PROKARYOTIC-LIKE IRES IN HCV AS A DRUG TARGETR01AI047365 · NIAID · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D, SARNOW, PETER · 1999 to 2010
$3.8M
Modulation of internal ribosome entry by ribosomal protein RPS25R01AI099506 · NIAID · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D, SARNOW, PETER · 2014 to 2018
$2.9M
Dynamics of Eukaryotic Translation InitiationR00GM111858 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI O'LEARY, SEAN E · 2016 to 2018
$720k
Dynamics of Eukaryotic Translation InitiationK99GM111858 · NIGMS · STANFORD UNIVERSITY · PI O'LEARY, SEAN E · 2014 to 2015
$180k
NIAID NIH HHS AI099245NIAID NIH HHS R01 AI047365NIAID NIH HHS R01 AI099245NIAID NIH HHS R01 AI099506NIGMS NIH HHS GM09968701NIGMS NIH HHS GM111858NIGMS NIH HHS R01 GM051266NIGMS NIH HHS R01 GM099687
6 · The paper itself

Abstract

The complexity of eukaryotic translation allows fine-tuned regulation of protein synthesis. Viruses use internal ribosome entry sites (IRESs) to minimize or, like the CrPV IRES, eliminate the need for initiation factors. Here, by exploiting the CrPV IRES, we observed the entire process of initiation and transition to elongation in real time. We directly tracked the CrPV IRES, 40S and 60S ribosomal subunits, and tRNA using single-molecule fluorescence spectroscopy and identified multiple parallel initiation pathways within the system. Our results distinguished two pathways of 80S:CrPV IRES complex assembly that produce elongation-competent complexes. Following 80S assembly, the requisite eEF2-mediated translocation results in an unstable intermediate that is captured by binding of the elongator tRNA. Whereas initiation can occur in the 0 and +1 frames, the arrival of the first tRNA defines the reading frame and strongly favors 0 frame initiation. Overall, even in the simplest system, an intricate reaction network regulates translation initiation.

Indexed as

Internal Ribosome Entry SitesProtein BiosynthesisDicistroviridaeRibosomal ProteinsRNA, TransferRNA, ViralInternal Ribosome Entry SitesRibosomal ProteinsRNA, TransferRNA, Viral

Identifiers

PMID27058789
PMCPMC4826567

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.