Evidence map›Paper›PMID 27056670›Full record

ArticleGenes & development2016

Collaboration of RAG2 with RAG1-like proteins during the evolution of V(D)J recombination.

Lina Marcela Carmona, Sebastian D Fugmann, David G Schatz

Open access · diamondAbstract read
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Article in Genes & development, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 73 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Lina Marcela CarmonaDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, 06520, USA;
Sebastian D FugmannDepartment of Biomedical Sciences, Chang Gung University, Tao-Yuan City 33302, Taiwan; Chang Gung Immunology Consortium, Chang Gung Memorial Hospital, Chang Gung University, Tao-Yuan City 33302, Taiwan;
David G SchatzDepartment of Immunobiology, Yale University School of Medicine, New Haven, Connecticut, 06520, USA; Howard Hughes Medical Institute, New Haven, Connecticut 06511, USA.
Yale University · USChang Gung Memorial Hospital · TW

Funding

INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
Immunoglobulin and T Cell Receptor Gene AssemblyR37AI032524 · NIAID · YALE UNIVERSITY · PI SCHATZ, DAVID G. · 2007 to 2016
$3.5M
Howard Hughes Medical InstituteNIAID NIH HHS R37 AI032524NIAID NIH HHS T32 AI007019
6 · The paper itself

Abstract

The recombination-activating gene 1 (RAG1) and RAG2 proteins initiate V(D)J recombination, the process that assembles the B- and T-lymphocyte antigen receptor genes of jawed vertebrates. RAG1 and RAG2 are thought to have arisen from a transposable element, but the origins of this element are not understood. We show that two ancestral RAG1 proteins, Transib transposase and purple sea urchin RAG1-like, have a latent ability to initiate V(D)J recombination when coexpressed with RAG2 and that in vitro transposition by Transib transposase is stimulated by RAG2. Conversely, we report low levels of V(D)J recombination by RAG1 in the absence of RAG2. Recombination by RAG1 alone differs from canonical V(D)J recombination in having lost the requirement for asymmetric DNA substrates, implicating RAG2 in the origins of the "12/23 rule," a fundamental regulatory feature of the reaction. We propose that evolution of RAG1/RAG2 began with a Transib transposon whose intrinsic recombination activity was enhanced by capture of an ancestral RAG2, allowing for the development of adaptive immunity.

Indexed as

Evolution, Molecular3T3 CellsAdaptive ImmunityAnimalsDNA-Binding ProteinsDNA Transposable ElementsHomeodomain ProteinsMiceStrongylocentrotus purpuratusTransposasesV(D)J RecombinationDNA-Binding ProteinsDNA Transposable ElementsHomeodomain ProteinsRAG-1 proteinTransposasesV(D)J recombination activating protein 2evolutionRAGTransibtranspositionV(D)J recombination

Identifiers

PMID27056670
PMCPMC4840297
OpenAlexW2330851262

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.