Evidence map›Paper›PMID 27053566›Full record

ArticleComparative medicine2016

Vaxar: A Web-Based Database of Laboratory Animal Responses to Vaccinations and Its Application in the Meta-Analysis of Different Animal Responses to Tuberculosis Vaccinations.

Thomas Todd, Natalie Dunn, Zuoshuang Xiang, Yongqun He

Abstract readComparative Study
In one paragraph

Article in Comparative medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Thomas ToddDivision of Comparative Medicine, University of South Florida, Tampa, Florida, USA.
Natalie DunnCollege of Literature, Sciences, and Arts, University of Michigan, Ann Arbor, Michigan, USA.
Zuoshuang XiangUnit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Yongqun HeUnit for Laboratory Animal Medicine, Department of Microbiology and Immunology,Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, Michigan, USA. yongqunh@umich.edu.

Funding

TRAINING IN LABORATORY ANIMAL SCIENCE AND MEDICINET32RR007008 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DYSKO, ROBERT C · 1985 to 2007
$2.6M
Ontology-based Information Network to Support Vaccine ResearchR01AI081062 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HE, YONGQUN · 2009 to 2012
$1.1M
NCRR NIH HHS RR007008-30NCRR NIH HHS T32 RR007008NIAID NIH HHS R01 AI081062NIAID NIH HHS R01AI081062
6 · The paper itself

Abstract

Animal models are indispensable for vaccine research and development. However, choosing which species to use and designing a vaccine study that is optimized for that species is often challenging. Vaxar (http://www.violinet.org/vaxar/) is a web-based database and analysis system that stores manually curated data regarding vaccine-induced responses in animals. To date, Vaxar encompasses models from 35 animal species including rodents, rabbits, ferrets, primates, and birds. These 35 species have been used to study more than 1300 experimentally tested vaccines for 164 pathogens and diseases significant to humans and domestic animals. The responses to vaccines by animals in more than 1500 experimental studies are recorded in Vaxar; these data can be used for systematic meta-analysis of various animal responses to a particular vaccine. For example, several variables, including animal strain, animal age, and the dose or route of either vaccination or challenge, might affect host response outcomes. Vaxar can also be used to identify variables that affect responses to different vaccines in a specific animal model. All data stored in Vaxar are publically available for web-based queries and analyses. Overall Vaxar provides a unique systematic approach for understanding vaccine-induced host immunity.

Indexed as

Computational BiologyDatabases, FactualModels, AnimalAnimalsAnimals, LaboratoryBiomedical ResearchInternetMeta-Analysis as TopicTuberculosisTuberculosis VaccinesVaccinesTuberculosis VaccinesVaccines

Identifiers

PMID27053566
PMCPMC4825961

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.