Evidence map›Paper›PMID 27053151›Full record

ArticleMolecular genetics and metabolism2016

Integrated analysis of proteome and transcriptome changes in the mucopolysaccharidosis type VII mouse hippocampus.

Michael K Parente, Ramona Rozen, Steven H Seeholzer, John H Wolfe

Open access · greenAbstract read
In one paragraph

Article in Molecular genetics and metabolism, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

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  10. THAP1 modulates oligodendrocyte maturation by regulating ECM degradation in lysosomes.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  18. Brain RNA-Seq Profiling of the Mucopolysaccharidosis Type II Mouse Model.International journal of molecular sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael K ParenteResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Ramona RozenResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Steven H SeeholzerResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
John H WolfeResearch Institute of the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; W. F. Goodman Center for Comparative Medical Genetics, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: jhwolfe@vet.upenn.edu.
Children's Hospital of Philadelphia · US

Funding

Disseminated AAV Vector Transport in the Brain Via Neuronal PathwaysR01NS038690 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI WOLFE, JOHN H · 2000 to 2015
$6.7M
The Intellectual and Developmental Disabilities Research Center at CHOP/PennU54HD086984 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI YUDKOFF, MARC · 2016 to 2020
$6.3M
Disseminated gene delivery to the CNS by human iPSC-derived neural stem cellsR01NS088667 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI WOLFE, JOHN H · 2015 to 2019
$1.8M
NICHD NIH HHS U54 HD086984NICHD NIH HHS U54-HD086984NINDS NIH HHS R01 NS038690NINDS NIH HHS R01-NS038690NINDS NIH HHS R01 NS088667NINDS NIH HHS R01-NS088667
6 · The paper itself

Abstract

Mucopolysaccharidosis type VII (MPS VII) is a lysosomal storage disease caused by the deficiency of β-glucuronidase. In this study, we compared the changes relative to normal littermates in the proteome and transcriptome of the hippocampus in the C57Bl/6 mouse model of MPS VII, which has well-documented histopathological and neurodegenerative changes. A completely different set of significant changes between normal and MPS VII littermates were found in each assay. Nevertheless, the functional annotation terms generated by the two methods showed agreement in many of the processes, which also corresponded to known pathology associated with the disease. Additionally, assay-specific changes were found, which in the proteomic analysis included mitochondria, energy generation, and cytoskeletal differences in the mutant, while the transcriptome differences included immune, vesicular, and extracellular matrix changes. In addition, the transcriptomic changes in the mutant hippocampus were concordant with those in a MPS VII mouse caused by the same mutation but on a different background inbred strain.

Indexed as

AnimalsGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHippocampusMiceMice, Inbred C57BLMolecular Sequence AnnotationMucopolysaccharidosis VIIOligonucleotide Array Sequence AnalysisProteomicsTandem Mass SpectrometryGUSBHippocampusLysosomal storage diseaseMitochondriaMPS VIIMucopolysaccharidosis type VIINeurodegenerationProteomic analysisTranscriptomeβ-Glucuronidase

Identifiers

PMID27053151
PMCPMC4832927
OpenAlexW2296060917

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.