Evidence map›Paper›PMID 27052102›Full record

ArticleScientific reports2016

82-kDa choline acetyltransferase and SATB1 localize to β-amyloid induced matrix attachment regions.

Warren Winick-Ng, Fabiana A Caetano, Jennifer Winick-Ng, Trevor M Morey, Bryan Heit, R Jane Rylett

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Warren Winick-NgDepartment of Physiology and Pharmacology, Schulich School of Medicine &Dentistry, University of Western Ontario, London, Ontario, N6A 5C1 Canada.
Fabiana A CaetanoDepartment of Physiology and Pharmacology, Schulich School of Medicine &Dentistry, University of Western Ontario, London, Ontario, N6A 5C1 Canada.
Jennifer Winick-NgLondon Health Sciences Centre, London, Ontario, N6A 5W9 Canada.
Trevor M MoreyDepartment of Physiology and Pharmacology, Schulich School of Medicine &Dentistry, University of Western Ontario, London, Ontario, N6A 5C1 Canada.
Bryan HeitDepartment of Microbiology and Immunology, Schulich School of Medicine &Dentistry, University of Western Ontario, London, Ontario, N6A 5C1 Canada.
R Jane RylettDepartment of Physiology and Pharmacology, Schulich School of Medicine &Dentistry, University of Western Ontario, London, Ontario, N6A 5C1 Canada.
Western University · CALondon Health Sciences Centre · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

The M-transcript of human choline acetyltransferase (ChAT) produces an 82-kDa protein (82-kDa ChAT) that concentrates in nuclei of cholinergic neurons. We assessed the effects of acute exposure to oligomeric amyloid-β1-42 (Aβ1-42) on 82-kDa ChAT disposition in SH-SY5Y neural cells, finding that acute exposure to Aβ1-42 results in increased association of 82-kDa ChAT with chromatin and formation of 82-kDa ChAT aggregates in nuclei. When measured by chromatin immunoprecipitation with next-generation sequencing (ChIP-seq), we identified that Aβ1-42-exposure increases 82-kDa ChAT association with gene promoters and introns. The Aβ1-42-induced 82-kDa ChAT aggregates co-localize with special AT-rich binding protein 1 (SATB1), which anchors DNA to scaffolding/matrix attachment regions (S/MARs). SATB1 had a similar genomic association as 82-kDa ChAT, with both proteins associating with synapse and cell stress genes. After Aβ1-42 -exposure, both SATB1 and 82-kDa ChAT are enriched at the same S/MAR on the APP gene, with 82-kDa ChAT expression attenuating an increase in an isoform-specific APP mRNA transcript. Finally, 82-kDa ChAT and SATB1 have patterned genomic association at regions enriched with S/MAR binding motifs. These results demonstrate that 82-kDa ChAT and SATB1 play critical roles in the response of neural cells to acute Aβ-exposure.

Indexed as

Amyloid beta-PeptidesAmyloid beta-Protein PrecursorCell LineCell NucleusCholine O-AcetyltransferaseChromatin ImmunoprecipitationEpigenesis, GeneticHigh-Throughput Nucleotide SequencingHumansIntronsMatrix Attachment Region Binding ProteinsMatrix Attachment RegionsMolecular WeightNeuronsPromoter Regions, GeneticAmyloid beta-PeptidesAmyloid beta-Protein PrecursorAPP protein, humanCholine O-AcetyltransferaseMatrix Attachment Region Binding ProteinsSATB1 protein, human

Identifiers

PMID27052102
PMCPMC4823725
OpenAlexW2312345184

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.