Evidence map›Paper›PMID 27050688›Full record

ArticleStructure (London, England : 1993)2016

Long-Range Communication between Different Functional Sites in the Picornaviral 3C Protein.

Yan M Chan, Ibrahim M Moustafa, Jamie J Arnold, Craig E Cameron, David D Boehr

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Inhibitory antibodies identify unique sites of therapeutic vulnerability in rhinovirus and other enteroviruses.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yan M ChanDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA.
Ibrahim M MoustafaDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.
Jamie J ArnoldDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.
Craig E CameronDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.
David D BoehrDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA. Electronic address: ddb12@psu.edu.
Pennsylvania State University · US

Funding

Picornavirus Genome ReplicationR01AI053531 · NIAID · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI CAMERON, CRAIG E. · 2003 to 2017
$5.7M
Picornavirus Genome ReplicationR37AI053531 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CRAIG E. CAMERON · 2018 to 2026
$4.8M
Watching Conformational Rearrangements in Poliovirus RNA-Dependent RNA PolymeraseR01AI104878 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI BOEHR, DAVID DOUGLAS · 2014 to 2024
$3.0M
Assembly dynamics and role of PI4P enriched replication organelles for enteroviraR01AI091985 · NIAID · RUTGERS THE STATE UNIV OF NJ NEWARK · PI CALI, ANN · 2011 to 2015
$2.0M
NIAID NIH HHS R01 AI053531NIAID NIH HHS R01AI053531NIAID NIH HHS R01 AI091985NIAID NIH HHS R01AI091985NIAID NIH HHS R01 AI104878NIAID NIH HHS R01AI104878NIAID NIH HHS R37 AI053531
6 · The paper itself

Abstract

The 3C protein is a master regulator of the picornaviral infection cycle, responsible for both cleaving viral and host proteins, and interacting with genomic RNA replication elements. Here we use nuclear magnetic resonance spectroscopy and molecular dynamics simulations to show that 3C is conformationally dynamic across multiple timescales. Binding of peptide and RNA lead to structural dynamics changes at both the protease active site and the RNA-binding site, consistent with these sites being dynamically coupled. Indeed, binding of RNA influences protease activity, and likewise, interactions at the active site affect RNA binding. We propose that RNA and peptide binding re-shapes the conformational energy landscape of 3C to regulate subsequent functions, including formation of complexes with other viral proteins. The observed channeling of the 3C energy landscape may be important for regulation of the viral infection cycle.

Indexed as

Binding SitesCatalytic DomainCysteine EndopeptidasesMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationPeptidesPicornaviridaeProtein BindingProtein ConformationRNAViral ProteinsCysteine EndopeptidasesPeptidesRNAViral Proteins

Identifiers

PMID27050688
PMCPMC4824962
OpenAlexW2325022298

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.