Evidence map›Paper›PMID 27050299›Full record

ArticleNature communications2016

A squalene synthase-like enzyme initiates production of tetraterpenoid hydrocarbons in Botryococcus braunii Race L.

Hem R Thapa, Mandar T Naik, Shigeru Okada, Kentaro Takada, István Molnár, Yuquan Xu, Timothy P Devarenne

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 50 citations in OpenAlex.

  1. The Inclusion of Supercritical Fluid Extract ofAntioxidants (Basel, Switzerland) · 2026
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  8. Microbial pathways for advanced biofuel production.Biochemical Society transactions · 2022
    Review
  9. Article
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  12. Review
  13. Comparative transcriptome analyses of oleaginousBiotechnology for biofuels · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Hem R ThapaDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA.
Mandar T NaikDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA.
Shigeru OkadaLaboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8657, Japan.
Kentaro TakadaLaboratory of Aquatic Natural Products Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8657, Japan.
István MolnárNatural Products Center, School of Natural Resources and the Environment, The University of Arizona, Tucson, Arizona 85739, USA.
Yuquan XuNatural Products Center, School of Natural Resources and the Environment, The University of Arizona, Tucson, Arizona 85739, USA.
Timothy P DevarenneDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843, USA.
Texas A&M University · USUniversity of Arizona · USJapan Science and Technology Agency · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The green microalga Botryococcus braunii is considered a promising biofuel feedstock producer due to its prodigious accumulation of hydrocarbon oils that can be converted into fuels. B. braunii Race L produces the C40 tetraterpenoid hydrocarbon lycopadiene via an uncharacterized biosynthetic pathway. Structural similarities suggest this pathway follows a biosynthetic mechanism analogous to that of C30 squalene. Confirming this hypothesis, the current study identifies C20 geranylgeranyl diphosphate (GGPP) as a precursor for lycopaoctaene biosynthesis, the first committed intermediate in the production of lycopadiene. Two squalene synthase (SS)-like complementary DNAs are identified in race L with one encoding a true SS and the other encoding an enzyme with lycopaoctaene synthase (LOS) activity. Interestingly, LOS uses alternative C15 and C20 prenyl diphosphate substrates to produce combinatorial hybrid hydrocarbons, but almost exclusively uses GGPP in vivo. This discovery highlights how SS enzyme diversification results in the production of specialized tetraterpenoid oils in race L of B. braunii.

Indexed as

Algal ProteinsBiocatalysisChlorophytaCloning, MolecularDNA, ComplementaryEnzyme AssaysEscherichia coliFarnesyl-Diphosphate FarnesyltransferaseGene ExpressionIsoenzymesKineticsPolyisoprenyl PhosphatesRecombinant ProteinsSqualeneSubstrate SpecificityTerpenesAlgal ProteinsDNA, ComplementaryFarnesyl-Diphosphate Farnesyltransferasegeranylgeranyl pyrophosphateIsoenzymesPolyisoprenyl PhosphatesRecombinant ProteinsSqualeneTerpenesTritium

Identifiers

PMID27050299
PMCPMC4823828
OpenAlexW2324336429

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.