Evidence map›Paper›PMID 27050164›Full record

ArticlePloS one2016

Loss of 5-Hydroxymethylcytosine Is an Independent Unfavorable Prognostic Factor for Esophageal Squamous Cell Carcinoma.

Xuejiao Shi, Yue Yu, Mei Luo, Zhirong Zhang, Susheng Shi, Xiaoli Feng, Zhaoli Chen, Jie He

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The diverse role of RNA methylation in esophageal cancer.Acta biochimica et biophysica Sinica · 2023
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. The TET enzymes.Cellular and molecular life sciences : CMLS · 2018
    Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Xuejiao ShiDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Yue YuDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Mei LuoDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Zhirong ZhangDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Susheng ShiDepartment of Pathology, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Xiaoli FengDepartment of Pathology, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Zhaoli ChenDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Jie HeDepartment of Thoracic Surgery, Cancer Hospital, Chinese Academy of Medical Sciences, Beijing, China.
Chinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ten-eleven translocation (TET) enzymes catalyze the oxidation of 5-methylcytosine (5-mC) to 5-hydroxymethylcytosine (5-hmC), 5-formylcytosine and 5-carboxylcytosine, which result in genomic DNA demethylation. It was reported that 5-hmC levels were decreased in a variety of cancers and could be regarded as an epigenetic hallmark of cancer. In the present study, 5-hmC levels were detected by immunohistochemistry (IHC) in 173 esophageal squamous cell carcinoma (ESCC) tissues and 91 corresponding adjacent non-tumor tissues; DNA dot blot assays were used to detect the 5-hmC level in another 50 pairs of ESCC tissues and adjacent non-tumor tissues. In addition, the mRNA level of TET1, TET2 and TET3 in these 50 pairs of ESCC tissues was detected by real-time PCR. The IHC and DNA dot blot results showed that 5-hmC levels were significantly lower in ESCC tissues compared with corresponding adjacent non-tumor tissues (P = 0.029). TET2 and TET3 expression was also significantly decreased in tumor tissues compared with paired non-tumor tissues (TET2, P < 0.0001; TET3, P = 0.009), and the decrease in 5-hmC was significantly associated with the downregulation of TET2 expression (r = 0.405, P = 0.004). Moreover, the loss of 5-hmC in ESCC tissues was significantly associated with poor overall survival among patients with ESCC (P = 0.043); multivariate Cox regression analysis showed that the loss of 5-hmC in ESCC tissues was an independent unfavorable prognostic indicator for patients with ESCC (HR = 1.569, P = 0.029). In conclusion, 5-hmC levels were decreased in ESCC tissues, and the loss of 5-hmC in tumor tissues was an independent unfavorable prognostic factor for patients with ESCC.

Indexed as

5-MethylcytosineCarcinoma, Squamous CellCytosineEsophageal NeoplasmsFemaleHumansMaleMiddle AgedPrognosis5-hydroxymethylcytosine5-MethylcytosineCytosine

Identifiers

PMID27050164
PMCPMC4822830
OpenAlexW2328882471

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.