Evidence map›Paper›PMID 27050135›Full record

ArticleActa crystallographica. Section D, Structural biology2016

Diffraction-geometry refinement in the DIALS framework.

David G Waterman, Graeme Winter, Richard J Gildea, James M Parkhurst, Aaron S Brewster, Nicholas K Sauter, Gwyndaf Evans

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed.

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  7. bioRxiv : the preprint server for biology · 2025
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  19. Processing macromolecular diffuse scattering data.bioRxiv : the preprint server for biology · 2023
    Article
  20. Article

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

David G WatermanSTFC Rutherford Appleton Laboratory, Didcot OX11 0QX, England.
Graeme WinterDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.
Richard J GildeaDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.
James M ParkhurstDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.
Aaron S BrewsterLawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Nicholas K SauterLawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Gwyndaf EvansDiamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, England.

Funding

Realizing New Horizons in X-ray Crystallography Data ProcessingR01GM095887 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2011 to 2014
$1.5M
Towards real-time XFEL data reduction with CCTBXR01GM102520 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SAUTER, NICHOLAS K · 2012 to 2015
$1.4M
NIGMS NIH HHS GM095887NIGMS NIH HHS GM102520NIGMS NIH HHS R01 GM095887NIGMS NIH HHS R01 GM102520
6 · The paper itself

Abstract

Rapid data collection and modern computing resources provide the opportunity to revisit the task of optimizing the model of diffraction geometry prior to integration. A comprehensive description is given of new software that builds upon established methods by performing a single global refinement procedure, utilizing a smoothly varying model of the crystal lattice where appropriate. This global refinement technique extends to multiple data sets, providing useful constraints to handle the problem of correlated parameters, particularly for small wedges of data. Examples of advanced uses of the software are given and the design is explained in detail, with particular emphasis on the flexibility and extensibility it entails.

Indexed as

Models, Theoreticalcentroid refinementDIALS frameworkglobal refinement

Identifiers

PMID27050135
PMCPMC4822564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.