Evidence map›Paper›PMID 27049119›Full record

ArticleScientific reports2016

Proteasomes generate spliced epitopes by two different mechanisms and as efficiently as non-spliced epitopes.

F Ebstein, K Textoris-Taube, C Keller, R Golnik, N Vigneron, B J Van den Eynde, B Schuler-Thurner, D Schadendorf, F K M Lorenz, W Uckert and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 96 citations in OpenAlex.

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  17. Neo-Splicetopes in Tumor Therapy: A Lost Case?Frontiers in immunology · 2022
    Review
  18. Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

F EbsteinInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
K Textoris-TaubeInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
C KellerInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
R GolnikInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
N VigneronLudwig Institute for Cancer Research, WELBIO (Walloon Excellence in Life Sciences and Biotechnology) and the de Duve Institute, Université catholique de Louvain, Place de l'Université 1, B-1200 Brussels, Belgium.
B J Van den EyndeLudwig Institute for Cancer Research, WELBIO (Walloon Excellence in Life Sciences and Biotechnology) and the de Duve Institute, Université catholique de Louvain, Place de l'Université 1, B-1200 Brussels, Belgium.
B Schuler-ThurnerDepartment of Dermatology, Universitätsklinikum Erlangen, Ulmenweg 18, D-91052 Erlangen, Germany.
D SchadendorfKlinik für Dermatologie, Venerologie und Allergologie, Universitätsklinikum Essen D - 45122 Essen, Germany &German Cancer Consortium (DKTK), Hufelandstraße 55, D-69120 Heidelberg, Germany.
F K M LorenzMax-Delbrück-Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany.
W UckertMax-Delbrück-Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany.
S UrbanInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
A LehmannInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
N Albrecht-KoepkeInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
K JanekInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
P HenkleinInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
A NiewiendaInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
P M KloetzelInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
M MishtoInstitut für Biochemie, Charité-Universitätsmedizin Berlin, Charitéplatz 1, D-10117 Berlin, Germany.
Charité - Universitätsmedizin Berlin · DEMax Delbrück Center · DEde Duve Institute · BEEssen University Hospital · DEUniversitätsklinikum Erlangen · DEWalloon Excellence in Lifesciences and Biotechnology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteasome-catalyzed peptide splicing represents an additional catalytic activity of proteasomes contributing to the pool of MHC-class I-presented epitopes. We here biochemically and functionally characterized a new melanoma gp100 derived spliced epitope. We demonstrate that the gp100(mel)47-52/40-42 antigenic peptide is generated in vitro and in cellulo by a not yet described proteasomal condensation reaction. gp100(mel)47-52/40-42 generation is enhanced in the presence of the β5i/LMP7 proteasome-subunit and elicits a peptide-specific CD8(+) T cell response. Importantly, we demonstrate that different gp100(mel)-derived spliced epitopes are generated and presented to CD8(+) T cells with efficacies comparable to non-spliced canonical tumor epitopes and that gp100(mel)-derived spliced epitopes trigger activation of CD8(+) T cells found in peripheral blood of half of the melanoma patients tested. Our data suggest that both transpeptidation and condensation reactions contribute to the frequent generation of spliced epitopes also in vivo and that their immune relevance may be comparable to non-spliced epitopes.

Indexed as

Alternative SplicingAlgorithmsAntigen PresentationAntigensAntigens, NeoplasmCase-Control StudiesCatalysisCD8-Positive T-LymphocytesCell Line, TumorEpitopesEpitopes, T-Lymphocytegp100 Melanoma AntigenHeLa CellsHumansInterferon-gammaMelanocytesAntigensAntigens, NeoplasmEpitopesEpitopes, T-Lymphocytegp100 Melanoma AntigenInterferon-gammaPeptidesProteasome Endopeptidase Complex

Identifiers

PMID27049119
PMCPMC4822137
OpenAlexW2325854044

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.