Evidence map›Paper›PMID 27047750›Full record

ArticleFEBS open bio2016

Experimentally optimized threading structures of the proton-coupled folate transporter.

Swapneeta S Date, Cheng-Yen Charles Chen, Yidong Chen, Michaela Jansen

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. The evolving biology of the proton-coupled folate transporter: New insights into regulation, structure, and mechanism.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Review
  3. Article
  4. Structural Modeling andFrontiers in plant science · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Swapneeta S DateDepartment of Cell Physiology and Molecular Biophysics School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA; Center for Membrane Protein Research School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA.
Cheng-Yen Charles ChenCenter for Membrane Protein Research School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA; Medical Student Summer Research Program School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA.
Yidong ChenCenter for Membrane Protein Research School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA; Medical Student Summer Research Program School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA.
Michaela JansenDepartment of Cell Physiology and Molecular Biophysics School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA; Center for Membrane Protein Research School of Medicine Texas Tech University Health Sciences Center Lubbock TX USA.
Texas Tech University · USTexas Tech University Health Sciences Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The proton-coupled folate transporter (PCFT, SLC46A1) transports folic acid across the plasma membrane, together with an excess of protons such that the net charge translocation is positive. We developed 3D structural models of PCFT threaded onto the X-ray structures of major facilitator superfamily (MFS) members that were identified as close structural homologues. The model of PCFT threaded onto the glycerol-3-phosphate transporter (GlpT) structure is consistent with detailed accessibility studies in the absence of extracellular substrate and at pH 7.4 presented here, and additionally with a multitude of other mutagenesis and functional studies. Characteristic MFS structural features are preserved in this PCFT model, such as 12 transmembrane helices divided into two pseudosymmetric bundles, and a high density of positive charges on the periphery of the cytoplasmic site that allow interactions with negatively charged lipid head-groups. Under the experimental conditions, PCFT predominantly samples the resting state, which in this case is inward-open. Several positions lining the substrate cavity have been identified. Motif A, a helix-turn-helix motif that is a hallmark of MFS transporters between transmembrane segments II and III is oriented appropriately to interact with residues from transmembrane segments IV as well as XI upon conformational transition to the outward-open state. A charge-relay system between three charged residues as well as apposing glycines in two α-helices, both contributed to by motif A, become engaged when PCFT is modeled on the outward-open state of a putative proton-driven transporter (YajR).

Indexed as

anticancer drugmembrane proteinproton‐coupled folate transporterstructural modelsubstituted cysteine accessibility method

Identifiers

PMID27047750
PMCPMC4794783
OpenAlexW2253365579

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.