ArticleFrontiers in plant science2016
Genome-Wide Single-Nucleotide Polymorphisms Discovery and High-Density Genetic Map Construction in Cauliflower Using Specific-Locus Amplified Fragment Sequencing.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 37 citations in OpenAlex.
- Article
- Article
- QTL mapping for growth-related traits by constructing the first genetic linkage map in Simao pine.BMC plant biology · 2022Article
- Understanding population structure and detection of QTLs for curding-related traits in Indian cauliflower by genotyping by sequencing analysis.Functional & integrative genomics · 2021Article
- Identification and Functional Verification of Cold Tolerance Genes in Spring Maize Seedlings Based on a Genome-Wide Association Study and Quantitative Trait Locus Mapping.Frontiers in plant science · 2021Article
- Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei).BMC genomics · 2020Article
- Identification of fruit size associated quantitative trait loci featuring SLAF based high-density linkage map of goji berry (Lycium spp.).BMC plant biology · 2020Article
- Identification of QTLs associated with curd architecture in cauliflower.BMC plant biology · 2020Article
- Construction, characteristics and high throughput molecular screening methodologies in some special breeding populations: a horticultural perspective.Journal of genetics · 2019Review
- Construction of a high-density genetic map and identification of loci controlling purple sepal trait of flower head in Brassica oleracea L. italica.BMC plant biology · 2019Article
- Article
- High-density genetic map construction and QTL mapping of first flower node in pepper (Capsicum annuum L.).BMC plant biology · 2019Article
- Genome wide analysis of MADS-box gene family in Brassica oleracea reveals conservation and variation in flower development.BMC plant biology · 2019Article
- Construction of a High-Density Genetic Map and Analysis of Seed-Related Traits Using Specific Length Amplified Fragment Sequencing forFrontiers in plant science · 2019Article
- Construction of a High-Density Genetic Map and Identification of Loci Related to Hollow Stem Trait in Broccoli (Frontiers in plant science · 2019Article
- Article
- Genomic Prediction and Association Mapping of Curd-Related Traits in Gene Bank Accessions of Cauliflower.G3 (Bethesda, Md.) · 2018Article
- Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA.PloS one · 2018Article
- Construction of the First High-Density Genetic Linkage Map and Analysis of Quantitative Trait Loci for Growth-Related Traits in Sinonovacula constricta.Marine biotechnology (New York, N.Y.) · 2017Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Molecular markers and genetic maps play an important role in plant genomics and breeding studies. Cauliflower is an important and distinctive vegetable; however, very few molecular resources have been reported for this species. In this study, a novel, specific-locus amplified fragment (SLAF) sequencing strategy was employed for large-scale single nucleotide polymorphism (SNP) discovery and high-density genetic map construction in a double-haploid, segregating population of cauliflower. A total of 12.47 Gb raw data containing 77.92 M pair-end reads were obtained after processing and 6815 polymorphic SLAFs between the two parents were detected. The average sequencing depths reached 52.66-fold for the female parent and 49.35-fold for the male parent. Subsequently, these polymorphic SLAFs were used to genotype the population and further filtered based on several criteria to construct a genetic linkage map of cauliflower. Finally, 1776 high-quality SLAF markers, including 2741 SNPs, constituted the linkage map with average data integrity of 95.68%. The final map spanned a total genetic length of 890.01 cM with an average marker interval of 0.50 cM, and covered 364.9 Mb of the reference genome. The markers and genetic map developed in this study could provide an important foundation not only for comparative genomics studies within Brassica oleracea species but also for quantitative trait loci identification and molecular breeding of cauliflower.
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