Evidence map›Paper›PMID 27046334›Full record

ArticleThe ISME journal2016

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus.

Sébastien Wielgoss, Xavier Didelot, Roy R Chaudhuri, Xuan Liu, Gareth D Weedall, Gregory J Velicer, Michiel Vos

Abstract read
In one paragraph

Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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  15. Long-term excessive application of KFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sébastien WielgossDepartment of Environmental Systems Science, Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland.
Xavier DidelotDepartment of Infectious Disease Epidemiology, Imperial College London, London, UK.
Roy R ChaudhuriCentre for Genomic Research, University of Liverpool, Liverpool, UK.
Xuan LiuCentre for Genomic Research, University of Liverpool, Liverpool, UK.
Gareth D WeedallCentre for Genomic Research, University of Liverpool, Liverpool, UK.
Gregory J VelicerDepartment of Environmental Systems Science, Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland.
Michiel VosEuropean Centre for Environmental and Human Health, Medical School, University of Exeter, Penryn, UK.

Funding

Medical Research Council MR/K010174/1
6 · The paper itself

Abstract

The bacterium Myxococcus xanthus glides through soil in search of prey microbes, but when food sources run out, cells cooperatively construct and sporulate within multicellular fruiting bodies. M. xanthus strains isolated from a 16 × 16-cm-scale patch of soil were previously shown to have diversified into many distinct compatibility types that are distinguished by the failure of swarming colonies to merge upon encounter. We sequenced the genomes of 22 isolates from this population belonging to the two most frequently occurring multilocus sequence type (MLST) clades to trace patterns of incipient genomic divergence, specifically related to social divergence. Although homologous recombination occurs frequently within the two MLST clades, we find an almost complete absence of recombination events between them. As the two clades are very closely related and live in sympatry, either ecological or genetic barriers must reduce genetic exchange between them. We find that the rate of change in the accessory genome is greater than the rate of amino-acid substitution in the core genome. We identify a large genomic tract that consistently differs between isolates that do not freely merge and therefore is a candidate region for harbouring gene(s) responsible for self/non-self discrimination.

Indexed as

Homologous RecombinationSoil MicrobiologyBacterial ProteinsMultilocus Sequence TypingMutationMyxococcus xanthusPhenotypeSpores, BacterialBacterial Proteins

Identifiers

PMID27046334
PMCPMC5030687

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.