Evidence map›Paper›PMID 27046055›Full record

ArticlePloS one2016

Genome-Wide Analysis of Human Metapneumovirus Evolution.

Jin Il Kim, Sehee Park, Ilseob Lee, Kwang Sook Park, Eun Jung Kwak, Kwang Mee Moon, Chang Kyu Lee, Joon-Yong Bae, Man-Seong Park, Ki-Joon Song

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jin Il KimDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Sehee ParkDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Ilseob LeeDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Kwang Sook ParkDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Eun Jung KwakDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Kwang Mee MoonDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Chang Kyu LeeDepartment of Laboratory Medicine, College of Medicine, Korea University, Seoul, Republic of Korea.
Joon-Yong BaeDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Man-Seong ParkDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Ki-Joon SongDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul, Republic of Korea.
Korea University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human metapneumovirus (HMPV) has been described as an important etiologic agent of upper and lower respiratory tract infections, especially in young children and the elderly. Most of school-aged children might be introduced to HMPVs, and exacerbation with other viral or bacterial super-infection is common. However, our understanding of the molecular evolution of HMPVs remains limited. To address the comprehensive evolutionary dynamics of HMPVs, we report a genome-wide analysis of the eight genes (N, P, M, F, M2, SH, G, and L) using 103 complete genome sequences. Phylogenetic reconstruction revealed that the eight genes from one HMPV strain grouped into the same genetic group among the five distinct lineages (A1, A2a, A2b, B1, and B2). A few exceptions of phylogenetic incongruence might suggest past recombination events, and we detected possible recombination breakpoints in the F, SH, and G coding regions. The five genetic lineages of HMPVs shared quite remote common ancestors ranging more than 220 to 470 years of age with the most recent origins for the A2b sublineage. Purifying selection was common, but most protein genes except the F and M2-2 coding regions also appeared to experience episodic diversifying selection. Taken together, these suggest that the five lineages of HMPVs maintain their individual evolutionary dynamics and that recombination and selection forces might work on shaping the genetic diversity of HMPVs.

Indexed as

Genome, ViralEvolution, MolecularHumansMetapneumovirusNasopharynxPhylogenyRecombination, Genetic

Identifiers

PMID27046055
PMCPMC4821609
OpenAlexW2321451028

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.