Evidence map›Paper›PMID 27046010›Full record

ArticleJournal of structural biology2017

Phenomenological and microscopic theories for catch bonds.

Shaon Chakrabarti, Michael Hinczewski, D Thirumalai

Abstract read
In one paragraph

Article in Journal of structural biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. The Energetic Landscape of Catch Bonds in TCR Interfaces.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  4. Article
  5. Swelling of Homogeneous Alginate Gels with Multi-Stimuli Sensitivity.International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Activated nanoscale actin-binding domain motion in the catenin-cadherin complex revealed by neutron spin echo spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Integrins as biomechanical sensors of the microenvironment.Nature reviews. Molecular cell biology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Catch bond drives stator mechanosensitivity in the bacterial flagellar motor.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shaon ChakrabartiDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, United States; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, United States. Electronic address: shaon@jimmy.harvard.edu.
Michael HinczewskiDepartment of Physics, Case Western Reserve University, OH 44106, United States.
D ThirumalaiBiophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, United States.

Funding

Computational Approaches to Single Molecule Force SpectroscopyR01GM089685 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI THIRUMALAI, DEVARAJAN · 2010 to 2020
$2.9M
NIGMS NIH HHS R01 GM089685
6 · The paper itself

Abstract

Lifetimes of bound states of protein complexes or biomolecule folded states typically decrease when subject to mechanical force. However, a plethora of biological systems exhibit the counter-intuitive phenomenon of catch bonding, where non-covalent bonds become stronger under externally applied forces. The quest to understand the origin of catch-bond behavior has led to the development of phenomenological and microscopic theories that can quantitatively recapitulate experimental data. Here, we assess the successes and limitations of such theories in explaining experimental data. The most widely applied approach is a phenomenological two-state model, which fits all of the available data on a variety of complexes: actomyosin, kinetochore-microtubule, selectin-ligand, and cadherin-catenin binding to filamentous actin. With a primary focus on the selectin family of cell-adhesion complexes, we discuss the positives and negatives of phenomenological models and the importance of evaluating the physical relevance of fitting parameters. We describe a microscopic theory for selectins, which provides a structural basis for catch bonds and predicts a crucial allosteric role for residues Asn82-Glu88. We emphasize the need for new theories and simulations that can mimic experimental conditions, given the complex response of cell adhesion complexes to force and their potential role in a variety of biological contexts.

Indexed as

Models, TheoreticalProtein BindingActomyosinCadherinsCateninsCell AdhesionKinetochoresLigandsSelectinsActomyosinCadherinsCateninsLigandsSelectinsCatch-bondCell adhesionEnergy landscapeForce

Identifiers

PMID27046010
PMCPMC5580263

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.