Evidence map›Paper›PMID 27045897›Full record

ArticleScientific reports2016

Optogenetic approaches addressing extracellular modulation of neural excitability.

Emily A Ferenczi, Johannes Vierock, Kyoko Atsuta-Tsunoda, Satoshi P Tsunoda, Charu Ramakrishnan, Christopher Gorini, Kimberly Thompson, Soo Yeun Lee, Andre Berndt, Chelsey Perry and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Chronic Ethanol Exposure Modulates Periaqueductal Gray to Extended Amygdala Dopamine Circuit.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Article
  6. Review
  7. Optogenetics at the presynapse.Nature neuroscience · 2022
    Review
  8. Optogenetics for light control of biological systems.Nature reviews. Methods primers · 2022
    Article
  9. Photoreceptive Ganglion Cells Drive Circuits for Local Inhibition in the Mouse Retina.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  10. Article
  11. Parvalbumin and Somatostatin Interneurons Contribute to the Generation of Hippocampal Gamma Oscillations.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  12. Article
  13. Comparative Principles for Next-Generation Neuroscience.Frontiers in behavioral neuroscience · 2019
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Emily A FerencziBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Johannes VierockInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Kyoko Atsuta-TsunodaInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Satoshi P TsunodaInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Charu RamakrishnanBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Christopher GoriniBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Kimberly ThompsonBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Soo Yeun LeeBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Andre BerndtBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Chelsey PerryBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Sonja MinnibergerInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Arend VogtInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Joanna MattisBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Rohit PrakashBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Scott DelpBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Karl DeisserothBioengineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA.
Peter HegemannInstitute of Biology, Experimental Biophysics, Invalidenstraße 42, D-10115 Berlin, Germany.
Stanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The extracellular ionic environment in neural tissue has the capacity to influence, and be influenced by, natural bouts of neural activity. We employed optogenetic approaches to control and investigate these interactions within and between cells, and across spatial scales. We began by developing a temporally precise means to study microdomain-scale interactions between extracellular protons and acid-sensing ion channels (ASICs). By coupling single-component proton-transporting optogenetic tools to ASICs to create two-component optogenetic constructs (TCOs), we found that acidification of the local extracellular membrane surface by a light-activated proton pump recruited a slow inward ASIC current, which required molecular proximity of the two components on the membrane. To elicit more global effects of activity modulation on 'bystander' neurons not under direct control, we used densely-expressed depolarizing (ChR2) or hyperpolarizing (eArch3.0, eNpHR3.0) tools to create a slow non-synaptic membrane current in bystander neurons, which matched the current direction seen in the directly modulated neurons. Extracellular protons played contributory role but were insufficient to explain the entire bystander effect, suggesting the recruitment of other mechanisms. Together, these findings present a new approach to the engineering of multicomponent optogenetic tools to manipulate ionic microdomains, and probe the complex neuronal-extracellular space interactions that regulate neural excitability.

Indexed as

OptogeneticsAcid Sensing Ion ChannelsAnimalsCalciumExtracellular SpaceFemaleHEK293 CellsHumansHydrogen-Ion ConcentrationLightMaleMembrane PotentialsMiceMice, Inbred C57BLModels, NeurologicalNeuronsAcid Sensing Ion ChannelsCalciumProtons

Identifiers

PMID27045897
PMCPMC4820717
OpenAlexW2329151863

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.