Evidence map›Paper›PMID 27045847›Full record

ArticlePloS one2016

Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species.

Sajjad Asaf, Abdul Latif Khan, Abdur Rahim Khan, Muhammad Waqas, Sang-Mo Kang, Muhammad Aaqil Khan, Raheem Shahzad, Chang-Woo Seo, Jae-Ho Shin, In-Jung Lee

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Complete Mitogenome ofInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Mitochondrial genome study ofFrontiers in plant science · 2024
    Article
  9. Complete mitochondrial genome assembly ofFrontiers in plant science · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Complete Plastid and Mitochondrial Genomes ofInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sajjad AsafSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Abdul Latif KhanChair of Oman's Medicinal Plants & Marine Natural Products, University of Nizwa, Nizwa, 616, Oman.
Abdur Rahim KhanSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Muhammad WaqasSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Sang-Mo KangSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Muhammad Aaqil KhanSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Raheem ShahzadSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Chang-Woo SeoSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
Jae-Ho ShinSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.
In-Jung LeeSchool of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oryza minuta (Poaceae family) is a tetraploid wild relative of cultivated rice with a BBCC genome. O. minuta has the potential to resist against various pathogenic diseases such as bacterial blight (BB), white backed planthopper (WBPH) and brown plant hopper (BPH). Here, we sequenced and annotated the complete mitochondrial genome of O. minuta. The mtDNA genome is 515,022 bp, containing 60 protein coding genes, 31 tRNA genes and two rRNA genes. The mitochondrial genome organization and the gene content at the nucleotide level are highly similar (89%) to that of O. rufipogon. Comparison with other related species revealed that most of the genes with known function are conserved among the Poaceae members. Similarly, O. minuta mt genome shared 24 protein-coding genes, 15 tRNA genes and 1 ribosomal RNA gene with other rice species (indica and japonica). The evolutionary relationship and phylogenetic analysis revealed that O. minuta is more closely related to O. rufipogon than to any other related species. Such studies are essential to understand the evolutionary divergence among species and analyze common gene pools to combat risks in the current scenario of a changing environment.

Indexed as

Genome, MitochondrialGenome, PlantEvolution, MolecularOpen Reading FramesOryzaSpecies Specificity

Identifiers

PMID27045847
PMCPMC4821559

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.