Evidence map›Paper›PMID 27044725›Full record

ArticleNature communications2016

A general strategy for expanding polymerase function by droplet microfluidics.

Andrew C Larsen, Matthew R Dunn, Andrew Hatch, Sujay P Sau, Cody Youngbull, John C Chaput

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 168 citations in OpenAlex.

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  20. Cell-Free Production Systems in Droplet Microfluidics.Advances in biochemical engineering/biotechnology · 2023
    Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Andrew C LarsenThe Biodesign Institute, Arizona State University, Tempe, Arizona 85287-5301, USA.
Matthew R DunnThe Biodesign Institute, Arizona State University, Tempe, Arizona 85287-5301, USA.
Andrew HatchSchool of Earth and Space Exploration, Arizona State University, Tempe, Arizona 85287-5301, USA.
Sujay P SauThe Biodesign Institute, Arizona State University, Tempe, Arizona 85287-5301, USA.
Cody YoungbullSchool of Earth and Space Exploration, Arizona State University, Tempe, Arizona 85287-5301, USA.
John C ChaputThe Biodesign Institute, Arizona State University, Tempe, Arizona 85287-5301, USA.
Arizona State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polymerases that synthesize artificial genetic polymers hold great promise for advancing future applications in synthetic biology. However, engineering natural polymerases to replicate unnatural genetic polymers is a challenging problem. Here we present droplet-based optical polymerase sorting (DrOPS) as a general strategy for expanding polymerase function that employs an optical sensor to monitor polymerase activity inside the microenvironment of a uniform synthetic compartment generated by microfluidics. We validated this approach by performing a complete cycle of encapsulation, sorting and recovery on a doped library and observed an enrichment of ∼1,200-fold for a model engineered polymerase. We then applied our method to evolve a manganese-independent α-L-threofuranosyl nucleic acid (TNA) polymerase that functions with >99% template-copying fidelity. Based on our findings, we suggest that DrOPS is a versatile tool that could be used to evolve any polymerase function, where optical detection can be achieved by Watson-Crick base pairing.

Indexed as

Biological AssayBase PairingBiomimetic MaterialsCells, ImmobilizedDNA-Directed DNA PolymeraseEscherichia coliMicrofluidicsMonosaccharidesNucleic AcidsOptical DevicesProtein EngineeringDNA-Directed DNA PolymeraseMonosaccharidesNucleic Acids

Identifiers

PMID27044725
PMCPMC4822039
OpenAlexW2335690990

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.