Evidence map›Paper›PMID 27044084›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB.

Seiji N Sugiman-Marangos, Yoni M Weiss, Murray S Junop

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. RedβNature communications · 2022
    Article
  10. Structural features and functional implications of proteins enabling the robustness ofComputational and structural biotechnology journal · 2020
    Review
  11. Natural Transformation inFrontiers in microbiology · 2020
    Article
  12. Structure and mechanism of the Red recombination system of bacteriophage λ.Progress in biophysics and molecular biology · 2019
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Seiji N Sugiman-MarangosDepartment of Biochemistry and Biomedical Sciences and M. G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON, L8N 3Z5, Canada;
Yoni M WeissMichael G. DeGroote School of Medicine, McMaster University, Hamilton, ON, L8S 4L8, Canada;
Murray S JunopDepartment of Biochemistry and Biomedical Sciences and M. G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON, L8N 3Z5, Canada; Schulich School of Medicine and Dentistry, Department of Biochemistry, University of Western Ontario, London, ON, N6A 5C1, Canada mjunop@uwo.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate pairing of DNA strands is essential for repair of DNA double-strand breaks (DSBs). How cells achieve accurate annealing when large regions of single-strand DNA are unpaired has remained unclear despite many efforts focused on understanding proteins, which mediate this process. Here we report the crystal structure of a single-strand annealing protein [DdrB (DNA damage response B)] in complex with a partially annealed DNA intermediate to 2.2 Å. This structure and supporting biochemical data reveal a mechanism for accurate annealing involving DdrB-mediated proofreading of strand complementarity. DdrB promotes high-fidelity annealing by constraining specific bases from unauthorized association and only releases annealed duplex when bound strands are fully complementary. To our knowledge, this mechanism provides the first understanding for how cells achieve accurate, protein-assisted strand annealing under biological conditions that would otherwise favor misannealing.

Indexed as

DNA Breaks, Double-StrandedBacterial ProteinsDeinococcusDNA, BacterialDNA-Binding ProteinsDNA RepairBacterial ProteinsDNA, BacterialDNA-Binding Proteinscrystal structureDdrBDeinococcus radioduransDNA repairsingle-strand DNA annealing

Identifiers

PMID27044084
PMCPMC4843489

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.