Evidence map›Paper›PMID 27043933›Full record

ReviewBiochemistry2016

Mutations for Worse or Better: Low-Fidelity DNA Synthesis by SOS DNA Polymerase V Is a Tightly Regulated Double-Edged Sword.

Malgorzata Jaszczur, Jeffrey G Bertram, Andrew Robinson, Antoine M van Oijen, Roger Woodgate, Michael M Cox, Myron F Goodman

Open access · greenAbstract readReview
In one paragraph

Review in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

  1. Pyocyanin produced byAntimicrobial agents and chemotherapy · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. CRISPR-Cas9-assisted genome editing inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Generation and Repair of Postreplication Gaps in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  8. Review
  9. Mutate or die: Atomic structures explain bacterial SOS induction.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Structural basis for regulation of SOS response in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Sending out an SOS - the bacterial DNA damage response.Genetics and molecular biology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Malgorzata JaszczurDepartment of Biological Sciences, University of Southern California , Los Angeles, California 90089-0371, United States.
Jeffrey G BertramDepartment of Biological Sciences, University of Southern California , Los Angeles, California 90089-0371, United States.
Andrew RobinsonSchool of Chemistry, University of Wollongong , Wollongong, Australia.
Antoine M van OijenSchool of Chemistry, University of Wollongong , Wollongong, Australia.
Roger WoodgateLaboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health , Rockville, Maryland 20850, United States.
Michael M CoxDepartment of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Myron F GoodmanDepartment of Biological Sciences, University of Southern California , Los Angeles, California 90089-0371, United States.
University of Southern California · USUniversity of Wollongong · AUNational Institutes of Health · USUniversity of Wisconsin–Madison · US

Funding

DNA Replication, Repair, and Mutagenesis In Eukaryotic And Prokaryotic CellsZIAHD001500 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI WOODGATE, ROGER · 2009 to 2025
$37.5M
THE BIOCHEMISTRY OF GENETIC RECOMBINATION/RECA PROTEINR01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 1985 to 2014
$6.8M
Biochemical Basis of SOS-Induced MutagenesisR01ES012259 · NIEHS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2003 to 2017
$5.6M
ERROR CORRECTION IN DNA SYNTHESIS--A BIOCHEMICAL STUDYR37GM021422 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2000 to 2009
$3.5M
Mechanisms and applications of recombinational DNA repairU01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 2015 to 2018
$1.7M
ERROR CORRECTION IN DNA SYNTHESIS: A BIOCHEMICAL STUDYR01GM021422 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 1985 to 2014
$1.6M
NIEHS NIH HHS R01 ES012259NIGMS NIH HHS R01 GM021422NIGMS NIH HHS R01 GM032335NIGMS NIH HHS R37 GM021422NIGMS NIH HHS U01 GM032335
6 · The paper itself

Abstract

1953, the year of Watson and Crick, bore witness to a less acclaimed yet highly influential discovery. Jean Weigle demonstrated that upon infection of Escherichia coli, λ phage deactivated by UV radiation, and thus unable to form progeny, could be reactivated by irradiation of the bacterial host. Evelyn Witkin and Miroslav Radman later revealed the presence of the SOS regulon. The more than 40 regulon genes are repressed by LexA protein and induced by the coproteolytic cleavage of LexA, catalyzed by RecA protein bound to single-stranded DNA, the RecA* nucleoprotein filament. Several SOS-induced proteins are engaged in repairing both cellular and extracellular damaged DNA. There's no "free lunch", however, because error-free repair is accompanied by error-prone translesion DNA synthesis (TLS), involving E. coli DNA polymerase V (UmuD'2C) and RecA*. This review describes the biochemical mechanisms of pol V-mediated TLS. pol V is active only as a mutasomal complex, pol V Mut = UmuD'2C-RecA-ATP. RecA* donates a single RecA subunit to pol V. We highlight three recent insights. (1) pol V Mut has an intrinsic DNA-dependent ATPase activity that governs polymerase binding and dissociation from DNA. (2) Active and inactive states of pol V Mut are determined at least in part by the distinct interactions between RecA and UmuC. (3) pol V is activated by RecA*, not at a blocked replisome, but at the inner cell membrane.

Indexed as

DNA ReplicationMutationSOS Response, GeneticsAdenosine TriphosphatasesBacteriaDNA, BacterialDNA-Directed DNA PolymeraseEscherichia coliEscherichia coli ProteinsMutagenesisRec A RecombinasesRegulonTranscriptional ActivationAdenosine TriphosphatasesDNA, BacterialDNA-Directed DNA PolymeraseDNA polymerase V, E coliEscherichia coli ProteinsRec A Recombinases

Identifiers

PMID27043933
PMCPMC4846499
OpenAlexW2209926473

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.