Evidence map›Paper›PMID 27043411›Full record

ArticleNature immunology2016

Late stages of T cell maturation in the thymus involve NF-κB and tonic type I interferon signaling.

Yan Xing, Xiaodan Wang, Stephen C Jameson, Kristin A Hogquist

Abstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 199 citations in OpenAlex.

  1. Review
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  15. Informed clinical decisions by outfoxing human FOXN1 variants.The Journal of allergy and clinical immunology · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yan XingThe Center for Immunology, Department of Laboratory Medicine &Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
Xiaodan WangThe Center for Immunology, Department of Laboratory Medicine &Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
Stephen C JamesonThe Center for Immunology, Department of Laboratory Medicine &Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
Kristin A HogquistThe Center for Immunology, Department of Laboratory Medicine &Pathology, University of Minnesota, Minneapolis, Minnesota, USA.
University of Minnesota · US

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
Type I interferons in tolerance in the steady stateP01AI035296 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HOGQUIST, KRISTIN A. · 1993 to 2023
$31.1M
Cortical epithelial cells in the selection and maturation of CD8 T cellsR01AI088209 · NIAID · UNIVERSITY OF MINNESOTA · PI HOGQUIST, KRISTIN A. · 2010 to 2014
$1.8M
NCI NIH HHS P30 CA077598NIAID NIH HHS P01 AI035296NIAID NIH HHS P01 AI35296NIAID NIH HHS R01 AI088209
6 · The paper itself

Abstract

Positive selection occurs in the thymic cortex, but critical maturation events occur later in the medulla. Here we defined the precise stage at which T cells acquired competence to proliferate and emigrate. Transcriptome analysis of late gene changes suggested roles for the transcription factor NF-κB and interferon signaling. Mice lacking the inhibitor of NF-κB (IκB) kinase (IKK) kinase TAK1 underwent normal positive selection but exhibited a specific block in functional maturation. NF-κB signaling provided protection from death mediated by the cytokine TNF and was required for proliferation and emigration. The interferon signature was independent of NF-κB; however, thymocytes deficient in the interferon-α (IFN-α) receptor IFN-αR showed reduced expression of the transcription factor STAT1 and phenotypic abnormality but were able to proliferate. Thus, both NF-κB and tonic interferon signals are involved in the final maturation of thymocytes into naive T cells.

Indexed as

AnimalsCell DifferentiationCell MovementCell ProliferationFlow CytometryMAP Kinase Kinase Kinase 7MAP Kinase Kinase KinasesMice, Inbred C57BLMice, KnockoutMice, TransgenicNF-kappa BOligonucleotide Array Sequence AnalysisReceptor, Interferon alpha-betaReverse Transcriptase Polymerase Chain ReactionSTAT1 Transcription FactorThymocytesMAP Kinase Kinase Kinase 7MAP Kinase Kinase KinasesNF-kappa BReceptor, Interferon alpha-betaStat1 protein, mouseSTAT1 Transcription FactorTumor Necrosis Factor-alpha

Identifiers

PMID27043411
PMCPMC4837029
OpenAlexW2323062796

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.