Evidence map›Paper›PMID 27040378›Full record

ArticleMutation research2016

Implications of genotypic differences in the generation of a urinary metabolomics radiation signature.

Evagelia C Laiakis, Evan L Pannkuk, Maria Elena Diaz-Rubio, Yi-Wen Wang, Tytus D Mak, Cynthia M Simbulan-Rosenthal, David J Brenner, Albert J Fornace

Open access · greenAbstract read
In one paragraph

Article in Mutation research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Evagelia C LaiakisDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington DC, USA. Electronic address: ecl28@georgetown.edu.
Evan L PannkukDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington DC, USA.
Maria Elena Diaz-RubioPediatrics, Division of Developmental Nutrition, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Yi-Wen WangDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington DC, USA.
Tytus D MakMass Spectrometry Data Center, National Institute of Standards and Technology (NIST), Gaithersburg MD, USA.
Cynthia M Simbulan-RosenthalDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington DC, USA.
David J BrennerColumbia University, New York, NY, USA.
Albert J FornaceDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington DC, USA; Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC, USA; Center of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah 22254, Saudi Arabia.
Georgetown University · USColumbia University · USNational Institute of Standards and Technology · USUniversity of Arkansas for Medical Sciences · US

Funding

Sample Engineering CoreU19AI067773 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FORNACE, ALBERT J · 2005 to 2024
$105.4M
Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI Louis M Weiner · 1990 to 2026
$71.5M
TRAINING GRANT IN TUMOR BIOLOGYT32CA009686 · NCI · GEORGETOWN UNIVERSITY · PI ANNA Tate RIEGEL, DAVID J ROBBINS · 1996 to 2026
$10.8M
NCI NIH HHS P30 CA051008NCI NIH HHS T32 CA009686NIAID NIH HHS U19 AI067773
6 · The paper itself

Abstract

The increased threat of radiological terrorism and accidental nuclear exposures, together with increased usage of radiation-based medical procedures, has made necessary the development of minimally invasive methods for rapid identification of exposed individuals. Genetically predisposed radiosensitive individuals comprise a significant number of the population and require specialized attention and treatments after such events. Metabolomics, the assessment of the collective small molecule content in a given biofluid or tissue, has proven effective in the rapid identification of radiation biomarkers and metabolic perturbations. To investigate how the genotypic background may alter the ionizing radiation (IR) signature, we analyzed urine from Parp1(-/-) mice, as a model radiosensitive genotype, exposed to IR by utilizing the analytical power of liquid chromatography coupled with mass spectrometry (LC-MS), as urine has been thoroughly investigated in wild type (WT) mice in previous studies from our laboratory. Samples were collected at days one and three after irradiation, time points that are important for the early and efficient triage of exposed individuals. Time-dependent perturbations in metabolites were observed in the tricarboxylic acid pathway (TCA). Other differentially excreted metabolites included amino acids and metabolites associated with dysregulation of energy metabolism pathways. Time-dependent apoptotic pathway activation between WT and mutant mice following IR exposure may explain the altered excretion patterns, although the origin of the metabolites remains to be determined. This first metabolomics study in urine from radiation exposed genetic mutant animal models provides evidence that this technology can be used to dissect the effects of genotoxic agents on metabolism by assessing easily accessible biofluids and identify biomarkers of radiation exposure. Applications of metabolomics could be incorporated in the future to further elucidate the effects of IR on the metabolism of Parp1(-/-) genotype by assessing individual tissues.

Indexed as

Radiation, IonizingAnimalsBiomarkersDose-Response Relationship, RadiationGenotypeMaleMetabolomeMetabolomicsMice, KnockoutPoly (ADP-Ribose) Polymerase-1Radiation DosageBiomarkersParp1 protein, mousePoly (ADP-Ribose) Polymerase-1BiomarkersDNA repairIonizing radiationMetabolomicsUrine

Identifiers

PMID27040378
PMCPMC4887295
OpenAlexW2304908468

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.