Evidence map›Paper›PMID 27038511›Full record

ArticleJournal of molecular biology2016

The Functional Role of eL19 and eB12 Intersubunit Bridge in the Eukaryotic Ribosome.

Ivan Kisly, Suna P Gulay, Uno Mäeorg, Jonathan D Dinman, Jaanus Remme, Tiina Tamm

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Archaea/eukaryote-specific ribosomal proteins - guardians of a complex structure.Computational and structural biotechnology journal · 2023
    Review
  9. Article
  10. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ivan KislyInstitute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia.
Suna P GulayDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, United States.
Uno MäeorgInstitute of Chemistry, University of Tartu, Tartu 50411, Estonia.
Jonathan D DinmanDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, United States.
Jaanus RemmeInstitute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia. Electronic address: jremme@ut.ee.
Tiina TammInstitute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia. Electronic address: ttamm@ut.ee.
University of Tartu · EEUniversity of Maryland, College Park · US

Funding

Translational Fidelity in EukaryotesR01GM058859 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI DINMAN, JONATHAN D · 1999 to 2011
$3.8M
X-linked Dyskeratosis Congenita and Ribosomal FrameshiftingR01HL119439 · NHLBI · UNIV OF MARYLAND, COLLEGE PARK · PI DINMAN, JONATHAN D, RUGGERO, DAVIDE · 2014 to 2017
$2.8M
Regulation of programmed -1 ribosomal frameshifting by micro-RNAsR01GM117177 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI DINMAN, JONATHAN D · 2015 to 2018
$1.2M
RIBOSOMAL FRAMESHIFTING AS A PROBE OF 5S RRNA FUNCTIONR01GM062143 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI DINMAN, JONATHAN D. · 2001 to 2004
$726k
NHLBI NIH HHS R01 HL119439NIGMS NIH HHS R01 GM058859NIGMS NIH HHS R01 GM062143NIGMS NIH HHS R01 GM117177
6 · The paper itself

Abstract

During translation, the two eukaryotic ribosomal subunits remain associated through 17 intersubunit bridges, five of which are eukaryote specific. These are mainly localized to the peripheral regions and are believed to stabilize the structure of the ribosome. The functional importance of these bridges remains largely unknown. Here, the essentiality of the eukaryote-specific bridge eB12 has been investigated. The main component of this bridge is ribosomal protein eL19 that is composed of an N-terminal globular domain, a middle region, and a long C-terminal α-helix. The analysis of deletion mutants demonstrated that the globular domain and middle region of eL19 are essential for cell viability, most likely functioning in ribosome assembly. The eB12 bridge, formed by contacts between the C-terminal α-helix of eL19 and 18S rRNA in concert with additional stabilizing interactions involving either eS7 or uS17, is dispensable for viability. Nevertheless, eL19 mutants impaired in eB12 bridge formation displayed slow growth phenotypes, altered sensitivity/resistance to translational inhibitors, and enhanced hyperosmotic stress tolerance. Biochemical analyses determined that the eB12 bridge contributes to the stability of ribosome subunit interactions in vitro. 60S subunits containing eL19 variants defective in eB12 bridge formation failed to form 80S ribosomes regardless of Mg(2+) concentration. The reassociation of 40S and mutant 60S subunits was markedly improved in the presence of deacetylated tRNA, emphasizing the importance of tRNAs during the subunit association. We propose that the eB12 bridge plays an important role in subunit joining and in optimizing ribosome functionality.

Indexed as

Eukaryotic CellsMutationNucleic Acid ConformationProtein BiosynthesisRibosomal ProteinsRibosome SubunitsRNA, RibosomalRNA, TransferSaccharomyces cerevisiaeRibosomal ProteinsRNA, RibosomalRNA, Transfereukaryote-specific bridgesribosome assemblyribosome subunit associationSaccharomyces cerevisiaestress tolerance

Identifiers

PMID27038511
PMCPMC4884501
OpenAlexW2319349539

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.