Evidence map›Paper›PMID 27038342›Full record

ArticleMicrobiologyOpen2016

Identification of inhibitors of the transmembrane protease FlaK of Methanococcus maripaludis.

Ina Coburger, Yvonne Schaub, Dirk Roeser, Kornelia Hardes, Patrick Maeder, Nina Klee, Torsten Steinmetzer, Diana Imhof, Wibke E Diederich, Manuel E Than

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 99% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Ina CoburgerLeibniz Institute on Aging (FLI), Protein Crystallography Group, Beutenbergstr. 11, Jena, 07745, Germany.
Yvonne SchaubLeibniz Institute on Aging (FLI), Protein Crystallography Group, Beutenbergstr. 11, Jena, 07745, Germany.
Dirk RoeserLeibniz Institute on Aging (FLI), Protein Crystallography Group, Beutenbergstr. 11, Jena, 07745, Germany.
Kornelia HardesDepartment of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, Marburg, 35032, Germany.
Patrick MaederDepartment of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, Marburg, 35032, Germany.
Nina KleeDepartment of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, Marburg, 35032, Germany.
Torsten SteinmetzerDepartment of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, Marburg, 35032, Germany.
Diana ImhofInstitute of Pharmacy, Pharmaceutical Chemistry I, University of Bonn, Brühler Str. 7, Bonn, 53119, Germany.
Wibke E DiederichDepartment of Pharmaceutical Chemistry, Philipps University Marburg, Marbacher Weg 6, Marburg, 35032, Germany.
Manuel E ThanLeibniz Institute on Aging (FLI), Protein Crystallography Group, Beutenbergstr. 11, Jena, 07745, Germany.
Philipps University of Marburg · DELeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GxGD-type intramembrane cleaving proteases (I-CLiPs) form a family of proteolytic enzymes that feature an aspartate-based catalytic mechanism. Yet, they structurally and functionally largely differ from the classical pepsin-like aspartic proteases. Among them are the archaeal enzyme FlaK, processing its substrate FlaB2 during the formation of flagella and γ-secretase, which is centrally involved in the etiology of the neurodegenerative Alzheimer's disease. We developed an optimized activity assay for FlaK and based on screening of a small in-house library and chemical synthesis, we identified compound 9 as the first inhibitor of this enzyme. Our results show that this intramembrane protease differs from classical pepsin-like aspartic proteases and give insights into the substrate recognition of this enzyme. By providing the needed tools to further study the enzymatic cycle of FlaK, our results also enable further studies towards a functional understanding of other GxGD-type I-CLiPs.

Indexed as

Amino Acid SequenceArchaeal ProteinsEndopeptidasesFlagellaFlagellinMembrane ProteinsMethanococcusProtease InhibitorsArchaeal ProteinsEndopeptidasesFlaB2 protein, archaealFlagellinMembrane ProteinsProtease InhibitorsGel-shift protease assayI-CLiPinhibitorsmembrane proteinsTFPP.

Identifiers

PMID27038342
PMCPMC4985597
OpenAlexW2312518131

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.