Evidence map›Paper›PMID 27038276›Full record

ArticleMolecular microbiology2016

A large family of anti-activators accompanying XylS/AraC family regulatory proteins.

Araceli E Santiago, Michael B Yan, Minh Tran, Nathan Wright, Deborah H Luzader, Melissa M Kendall, Fernando Ruiz-Perez, James P Nataro

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  3. A Mini-Review of EnteroaggregativePolish journal of microbiology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Araceli E SantiagoDepartment of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0003-3988-0853
Michael B YanDepartment of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA, USA.
Minh TranDepartment of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA, USA.
Nathan WrightDepartment of Chemistry and Biochemistry, James Madison University, Harrisonburg, VA, USA.
Deborah H LuzaderDepartment of Microbiology, Immunology, and Cancer Biology, University of Virginia, School of Medicine, Charlottesville, VA, USA.
Melissa M KendallDepartment of Microbiology, Immunology, and Cancer Biology, University of Virginia, School of Medicine, Charlottesville, VA, USA.
Fernando Ruiz-PerezDepartment of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA, USA.
James P NataroDepartment of Pediatrics, University of Virginia School of Medicine, Charlottesville, VA, USA.
University of Virginia · USJames Madison University · US

Funding

Virulence in Enteroaggregative Escherichia coliR01AI033096 · NIAID · UNIVERSITY OF VIRGINIA · PI NATARO, JAMES P. · 1996 to 2014
$6.6M
Global Biothreats Training ProgramT32AI055432 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI CRISS, ALISON K, PETRI, WILLIAM A · 2003 to 2022
$4.0M
Ethanolamine Signaling in Virulence Gene Regulation and Host/Microbial InteractionsR01AI118732 · NIAID · UNIVERSITY OF VIRGINIA · PI KENDALL, MELISSA · 2015 to 2019
$1.9M
NIAID NIH HHS R01 AI033096NIAID NIH HHS R01 AI118732NIAID NIH HHS T32 AI055432
6 · The paper itself

Abstract

AraC Negative Regulators (ANR) suppress virulence genes by directly down-regulating AraC/XylS members in Gram-negative bacteria. In this study, we sought to investigate the distribution and molecular mechanisms of regulatory function for ANRs among different bacterial pathogens. We identified more than 200 ANRs distributed in diverse clinically important gram negative pathogens, including Vibrio spp., Salmonella spp., Shigella spp., Yersinia spp., Citrobacter spp., enterotoxigenic (ETEC) and enteroaggregative E. coli (EAEC), and members of the Pasteurellaceae. By employing a bacterial two hybrid system, pull down assays and surface plasmon resonance (SPR) analysis, we demonstrate that Aar (AggR-activated regulator), a prototype member of the ANR family in EAEC, binds with high affinity to the central linker domain of AraC-like member AggR. ANR-AggR binding disrupted AggR dimerization and prevented AggR-DNA binding. ANR homologs of Vibrio cholerae, Citrobacter rodentium, Salmonella enterica and ETEC were capable of complementing Aar activity by repressing aggR expression in EAEC strain 042. ANR homologs of ETEC and Vibrio cholerae bound to AggR as well as to other members of the AraC family, including Rns and ToxT. The predicted proteins of all ANR members exhibit three highly conserved predicted α-helices. Site-directed mutagenesis studies suggest that at least predicted α-helices 2 and 3 are required for Aar activity. In sum, our data strongly suggest that members of the novel ANR family act by directly binding to their cognate AraC partners.

Indexed as

AraC Transcription FactorBacterial ProteinsDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGenes, araCGram-Negative BacteriaMutagenesis, Site-DirectedPhylogenyStructure-Activity RelationshipTrans-ActivatorsTranscription FactorsVirulenceAraC Transcription FactorBacterial ProteinsDNA-Binding ProteinsEscherichia coli ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID27038276
PMCPMC4983702
OpenAlexW2334631750

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.