ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016
Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.
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63 citing papers in PubMed.
- Transgenerational genetic and epigenetic changes induced by gamma-ray in Fagopyrum species.BMC plant biology · 2025Article
- EfficientInternational journal of molecular sciences · 2025Article
- Genome-wide identification and association analysis of informative SNPs of various nutri-nutraceutical traits in Buckwheat (Frontiers in plant science · 2025Article
- Establishment of monoclonal antibodies of BW10kDa distinguish it from Fag e 2 related to anaphylaxis.Food chemistry. Molecular sciences · 2024Article
- DNA methylation analysis of floral parts revealed dynamic changes during the development of homostylous Fagopyrum tataricum and heterostylous F. esculentum flowers.BMC plant biology · 2024Article
- PfPIN5 promotes style elongation by regulating cell length in Primula forbesii Franch.Annals of botany · 2024Article
- Two floral forms in the same species-distyly.Planta · 2023Review
- Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat.Nature plants · 2023Article
- Specialized Metabolites Accumulation Pattern in Buckwheat Is Strongly Influenced by Accession Choice and Co-Existing Weeds.Plants (Basel, Switzerland) · 2023Article
- Joint QTL Mapping and Transcriptome Sequencing Analysis Reveal Candidate Seed-Shattering-Related Genes in Common Buckwheat.International journal of molecular sciences · 2023Article
- Haplotype-resolved genomes of two buckwheat crops provide insights into their contrasted rutin concentrations and reproductive systems.BMC biology · 2023Article
- Development and chromosomal characterization of interspecific hybrids between common buckwheat (Breeding science · 2023Article
- Editorial: Advances in buckwheat research.Frontiers in plant science · 2023Article
- Efficient Agrobacterium-mediated transformation and genome editing ofFrontiers in plant science · 2023Article
- Characterization of 2S albumin allergenic proteins for anaphylaxis in common buckwheat.Food chemistry. Molecular sciences · 2022Article
- 2S albumin g13 polypeptide, less related to Fag e 2, can be eliminated in common buckwheat (Food chemistry. Molecular sciences · 2022Article
- Comparative transcriptomics reveals commonalities and differences in the genetic underpinnings of a floral dimorphism.Scientific reports · 2022Article
- ThePlants (Basel, Switzerland) · 2022Article
- Identification of Medicinal Compounds of Fagopyri Dibotryis Rhizome from Different Origins and Its Varieties Using UPLC-MS/MS-Based Metabolomics.Metabolites · 2022Article
- Genetic basis of maturity time is independent from that of flowering time and contributes to ecotype differentiation in common buckwheat (Fagopyrum esculentum Moench).BMC plant biology · 2022Article
3 more citing papers are in PubMed but not listed here.
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Authors and funding
9 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Buckwheat (Fagopyrum esculentum Moench; 2n = 2x = 16) is a nutritionally dense annual crop widely grown in temperate zones. To accelerate molecular breeding programmes of this important crop, we generated a draft assembly of the buckwheat genome using short reads obtained by next-generation sequencing (NGS), and constructed the Buckwheat Genome DataBase. After assembling short reads, we determined 387,594 scaffolds as the draft genome sequence (FES_r1.0). The total length of FES_r1.0 was 1,177,687,305 bp, and the N50 of the scaffolds was 25,109 bp. Gene prediction analysis revealed 286,768 coding sequences (CDSs; FES_r1.0_cds) including those related to transposable elements. The total length of FES_r1.0_cds was 212,917,911 bp, and the N50 was 1,101 bp. Of these, the functions of 35,816 CDSs excluding those for transposable elements were annotated by BLAST analysis. To demonstrate the utility of the database, we conducted several test analyses using BLAST and keyword searches. Furthermore, we used the draft genome as a reference sequence for NGS-based markers, and successfully identified novel candidate genes controlling heteromorphic self-incompatibility of buckwheat. The database and draft genome sequence provide a valuable resource that can be used in efforts to develop buckwheat cultivars with superior agronomic traits.
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