Evidence map›Paper›PMID 27036939›Full record

ArticleThe Journal of biological chemistry2016

i-bodies, Human Single Domain Antibodies That Antagonize Chemokine Receptor CXCR4.

Katherine Griffiths, Olan Dolezal, Benjamin Cao, Susan K Nilsson, Heng B See, Kevin D G Pfleger, Michael Roche, Paul R Gorry, Andrew Pow, Katerina Viduka and 13 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 66 citations in OpenAlex.

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  10. Improving antibody drug development using bionanotechnology.Current opinion in biotechnology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 1 country.

Katherine GriffithsFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Olan DolezalBiomedical Manufacturing, CSIRO Manufacturing, 343 Royal Parade, Parkville, Victoria 3052.
Benjamin Caothe Australian Regenerative Medicine Institute, Monash University, Wellington Road, Clayton, Victoria 3800,; Biomedical Manufacturing, CSIRO Manufacturing, Bayview Avenue, Clayton, Victoria 3168.
Susan K Nilssonthe Australian Regenerative Medicine Institute, Monash University, Wellington Road, Clayton, Victoria 3800,; Biomedical Manufacturing, CSIRO Manufacturing, Bayview Avenue, Clayton, Victoria 3168.
Heng B Seethe Harry Perkins Institute of Medical Research, Nedlands, Western Australia 6009,; the Centre for Medical Research, University of Western Australia, Crawley, Western Australia 6009.
Kevin D G Pflegerthe Harry Perkins Institute of Medical Research, Nedlands, Western Australia 6009,; the Centre for Medical Research, University of Western Australia, Crawley, Western Australia 6009,; Dimerix Bioscience Ltd., Nedlands, Western Australia 6009.
Michael Rochethe Doherty Institute for Infection and Immunity, University of Melbourne, 792 Elizabeth Street, Melbourne, Victoria 3000,; the Burnet Institute, 85 Commercial Road, Melbourne, Victoria 3004.
Paul R Gorrythe School of Health and Biomedical Sciences, College of Science, Engineering and Health, RMIT University, Melbourne, Victoria 3001.
Andrew PowFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Katerina VidukaFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Kevin LimFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Bernadine G C LuFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Denison H C ChangFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Thomas Murray-RustFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Marc Kvansakulthe Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, and.
Matthew A Peruginithe Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, and.
Con Dogovskithe Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, and.
Marcel DoerflingerFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Yuan Zhangthe Department of Medicine, St. Vincent's Hospital, University of Melbourne, Fitzroy, Victoria 3065, Australia.
Kathy ParisiFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083,; the Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, and.
Joanne L CaseyFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083.
Stewart D NuttallBiomedical Manufacturing, CSIRO Manufacturing, 343 Royal Parade, Parkville, Victoria 3052.
Michael FoleyFrom AdAlta Pty. Ltd., 15/2 Park Dr., Bundoora, Victoria 3083,; the Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, and. Electronic address: m.foley@latrobe.edu.au.
Agriculture Victoria Services (Australia) · AULa Trobe University · AUAustralian Regenerative Medicine Institute · AUCSIRO Manufacturing · AUThe University of Western Australia · AUBurnet Institute · AURMIT University · AUThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CXCR4 is a G protein-coupled receptor with excellent potential as a therapeutic target for a range of clinical conditions, including stem cell mobilization, cancer prognosis and treatment, fibrosis therapy, and HIV infection. We report here the development of a fully human single-domain antibody-like scaffold termed an "i-body," the engineering of which produces an i-body library possessing a long complementarity determining region binding loop, and the isolation and characterization of a panel of i-bodies with activity against human CXCR4. The CXCR4-specific i-bodies show antagonistic activity in a range of in vitro and in vivo assays, including inhibition of HIV infection, cell migration, and leukocyte recruitment but, importantly, not the mobilization of hematopoietic stem cells. Epitope mapping of the three CXCR4 i-bodies AM3-114, AM4-272, and AM3-523 revealed binding deep in the binding pocket of the receptor.

Indexed as

AnimalsAntibody SpecificityBinding SitesCell Line, TumorCell MovementCells, CulturedCrystallography, X-RayEpitope MappingHEK293 CellsHIV InfectionsHL-60 CellsHumansJurkat CellsMice, Inbred BALB CMice, Inbred NODMice, KnockoutReceptors, CXCR4Single-Domain Antibodiesantibody engineeringCXC chemokine receptor type 4 (CXCR-4)G protein-coupled receptor (GPCR)hematopoietic stem cellsprotein structuresingle-domain antibody (sdAb, nanobody)

Identifiers

PMID27036939
PMCPMC4933451
OpenAlexW2330144095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.