Evidence map›Paper›PMID 27035980›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes.

Andrew Brantley Hall, Philippos-Aris Papathanos, Atashi Sharma, Changde Cheng, Omar S Akbari, Lauren Assour, Nicholas H Bergman, Alessia Cagnetti, Andrea Crisanti, Tania Dottorini and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 111 citations in OpenAlex.

  1. Mosquito sex determination: recent advances and applications.Current opinion in insect science · 2025
    Review
  2. Sex-specific transcriptome dynamics ofGenes & development · 2025
    Article
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  17. Natural and Engineered Sex Ratio Distortion in Insects.Frontiers in ecology and evolution · 2022
    Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 4 countries.

Andrew Brantley HallThe Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061;
Philippos-Aris PapathanosSection of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy; Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Atashi SharmaDepartment of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061;
Changde ChengEck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556;
Omar S AkbariDepartment of Entomology, Riverside Center for Disease Vector Research, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521;
Lauren AssourDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556;
Nicholas H BergmanNational Biodefense Analysis and Countermeasures Center, Frederick, MD 21702;
Alessia CagnettiSection of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy;
Andrea CrisantiSection of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy; Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Tania DottoriniDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Elisa FiorentiniDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Roberto GaliziDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Jonathan HnathNational Biodefense Analysis and Countermeasures Center, Frederick, MD 21702;
Xiaofang JiangThe Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061;
Sergey KorenGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892;
Tony NolanDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Diane RaduneNational Biodefense Analysis and Countermeasures Center, Frederick, MD 21702;
Maria V SharakhovaDepartment of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Laboratory of Evolutionary Cytogenetics, Tomsk State University, Tomsk 634050, Russia;
Aaron SteeleDepartment of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556;
Vladimir A TimoshevskiyDepartment of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061;
Nikolai WindbichlerDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom;
Simo ZhangSchool of Informatics and Computing, Indiana University, Bloomington, IN 47405;
Matthew W HahnSchool of Informatics and Computing, Indiana University, Bloomington, IN 47405; Department of Biology, Indiana University, Bloomington, IN 47405;ORCID http://orcid.org/0000-0002-5731-8808
Adam M PhillippyGenome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892;ORCID http://orcid.org/0000-0003-2983-8934
Scott J EmrichEck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556;
Igor V SharakhovThe Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Laboratory of Evolutionary Cytogenetics, Tomsk State University, Tomsk 634050, Russia; igor@vt.edu jaketu@vt.edu nbesansk@nd.edu.
Zhijian Jake TuThe Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 igor@vt.edu jaketu@vt.edu nbesansk@nd.edu.
Nora J BesanskyEck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556; igor@vt.edu jaketu@vt.edu nbesansk@nd.edu.
Imperial College London · GBUniversity of Notre Dame · USVirginia Tech · USUniversity of Perugia · ITIndiana University Bloomington · USNational Institutes of Health · USNational Research Tomsk State University · RUUniversity of California, Riverside · US

Funding

Single-molecule sequence assembly and analysisZIAHG200398 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PHILLIPPY, ADAM · 2016 to 2025
$15.9M
Functional Genomics of Inversion 2La in Anopheles gambiaeR01AI076584 · NIAID · UNIVERSITY OF NOTRE DAME · PI BESANSKY, NORA JESSIE · 2009 to 2013
$2.4M
Function of Guy1, a Y-specific gene of Anopheles stephensiR21AI105575 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI TU, ZHIJIAN JAKE · 2013 to 2014
$428k
Anchoring and uniting the An. funestus assembly for improved vector analysisR21AI112734 · NIAID · UNIVERSITY OF NOTRE DAME · PI BESANSKY, NORA JESSIE · 2014 to 2015
$427k
Highly finished chromosome-based genome assembly for Anopheles gambiaeR21AI094289 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SHARAKHOV, IGOR V · 2011 to 2012
$420k
Comparative genome mapping of the Anopheles species clusterR21AI099528 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SHARAKHOV, IGOR V · 2014 to 2015
$419k
Genetic basis of salt tolerance in Anopheles gambiae s.l.R21AI101459 · NIAID · UNIVERSITY OF NOTRE DAME · PI BESANSKY, NORA JESSIE · 2012 to 2013
$401k
European Research Council 335724NIAID NIH HHS R01 AI076584NIAID NIH HHS R21 AI094289NIAID NIH HHS R21 AI099528NIAID NIH HHS R21 AI101459NIAID NIH HHS R21 AI105575NIAID NIH HHS R21 AI112734
6 · The paper itself

Abstract

Y chromosomes control essential male functions in many species, including sex determination and fertility. However, because of obstacles posed by repeat-rich heterochromatin, knowledge of Y chromosome sequences is limited to a handful of model organisms, constraining our understanding of Y biology across the tree of life. Here, we leverage long single-molecule sequencing to determine the content and structure of the nonrecombining Y chromosome of the primary African malaria mosquito, Anopheles gambiae We find that the An. gambiae Y consists almost entirely of a few massively amplified, tandemly arrayed repeats, some of which can recombine with similar repeats on the X chromosome. Sex-specific genome resequencing in a recent species radiation, the An. gambiae complex, revealed rapid sequence turnover within An. gambiae and among species. Exploiting 52 sex-specific An. gambiae RNA-Seq datasets representing all developmental stages, we identified a small repertoire of Y-linked genes that lack X gametologs and are not Y-linked in any other species except An. gambiae, with the notable exception of YG2, a candidate male-determining gene. YG2 is the only gene conserved and exclusive to the Y in all species examined, yet sequence similarity to YG2 is not detectable in the genome of a more distant mosquito relative, suggesting rapid evolution of Y chromosome genes in this highly dynamic genus of malaria vectors. The extensive characterization of the An. gambiae Y provides a long-awaited foundation for studying male mosquito biology, and will inform novel mosquito control strategies based on the manipulation of Y chromosomes.

Indexed as

AnimalsAnophelesChromosomes, InsectFemaleInsect VectorsMalariaMalePhylogenySequence Analysis, DNAX ChromosomeY ChromosomeAnopheles gambiaePacBioRNA-Seqtandem repetitive DNAY-chromosome

Identifiers

PMID27035980
PMCPMC4839409
OpenAlexW2313423684

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.