Evidence map›Paper›PMID 27035945›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides.

William G Alexander, Jennifer H Wisecaver, Antonis Rokas, Chris Todd Hittinger

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 85 citations in OpenAlex.

  1. Review
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  14. Heterologous Expressed NbSWP12 from MicrosporidiaJournal of fungi (Basel, Switzerland) · 2022
    Article
  15. The Evolution of the Satratoxin and Atranone Gene Clusters ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  16. Review
  17. Comparative Genomics of Microsporidia.Experientia supplementum (2012) · 2022
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

William G AlexanderLaboratory of Genetics, DOE (Department of Energy) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Genome Center of Wisconsin, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, WI 53706;
Jennifer H WisecaverDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.
Antonis RokasDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37235.ORCID http://orcid.org/0000-0002-7248-6551
Chris Todd HittingerLaboratory of Genetics, DOE (Department of Energy) Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Genome Center of Wisconsin, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Madison, WI 53706; cthittinger@wisc.edu.
University of Wisconsin–Madison · USVanderbilt University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal gene transfer (HGT) among bacteria, archaea, and viruses is widespread, but the extent of transfers from these lineages into eukaryotic organisms is contentious. Here we systematically identify hundreds of genes that were likely acquired horizontally from a variety of sources by the early-diverging fungal phyla Microsporidia and Cryptomycota. Interestingly, the Microsporidia have acquired via HGT several genes involved in nucleic acid synthesis and salvage, such as those encoding thymidine kinase (TK), cytidylate kinase, and purine nucleotide phosphorylase. We show that these HGT-derived nucleic acid synthesis genes tend to function at the interface between the metabolic networks of the host and pathogen. Thus, these genes likely play vital roles in diversifying the useable nucleic acid components available to the intracellular parasite, often through the direct capture of resources from the host. Using an in vivo viability assay, we also demonstrate that one of these genes, TK, encodes an enzyme that is capable of activating known prodrugs to their active form, which suggests a possible treatment route for microsporidiosis. We further argue that interfacial genes with well-understood activities, especially those horizontally transferred from bacteria or viruses, could provide medical treatments for microsporidian infections.

Indexed as

Genes, FungalGene Transfer, HorizontalHost-Pathogen InteractionsFungiNucleosidesNucleotidesPhylogenyNucleosidesNucleotidesCryptomycotahorizontal gene transfermetabolic networksMicrosporidiathymidine kinase

Identifiers

PMID27035945
PMCPMC4839431
OpenAlexW2332817693

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.