Evidence map›Paper›PMID 27035284›Full record

ArticleScientific reports2016

Somatic Mutations and Genetic Variants of NOTCH1 in Head and Neck Squamous Cell Carcinoma Occurrence and Development.

Yu-Fan Liu, Shang-Lun Chiang, Chien-Yu Lin, Jan-Gowth Chang, Chia-Min Chung, Albert Min-Shan Ko, You-Zhe Lin, Chien-Hung Lee, Ka-Wo Lee, Mu-Kuan Chen and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. NOTCH1-Related Leukoencephalopathy: A Novel Variant and Literature Review.International journal of molecular sciences · 2024
    Review
  5. Review
  6. Review
  7. Recommendations for the use of biomarkers for head and neck cancer, including salivary gland tumours: a consensus of the Spanish Society of Medical Oncology and the Spanish Society of Pathology.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Yu-Fan LiuDepartment of Biomedical Sciences, College of Medicine Sciences and Technology, Chung Shan Medical University, Taichung, Taiwan.
Shang-Lun ChiangEnvironment-Omics-Diseases Research Centre, China Medical University Hospital, Taichung, Taiwan.
Chien-Yu LinDepartment of Laboratory Medicine, China Medical University Hospital, Taichung, Taiwan.
Jan-Gowth ChangDepartment of Laboratory Medicine, China Medical University Hospital, Taichung, Taiwan.
Chia-Min ChungEnvironment-Omics-Diseases Research Centre, China Medical University Hospital, Taichung, Taiwan.
Albert Min-Shan KoDepartment of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig D-04103, Germany.
You-Zhe LinEnvironment-Omics-Diseases Research Centre, China Medical University Hospital, Taichung, Taiwan.
Chien-Hung LeeDepartment of Public Health, College of Health Science, Kaohsiung Medical University, Taiwan.
Ka-Wo LeeDepartment of Otolaryngology, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan.
Mu-Kuan ChenOral Cancer Center, Changhua Christian Hospital, Changhua, Taiwan.
Chun-Hung HuaDepartment of Otorhinolaryngology, China Medical University Hospital, Taichung, Taiwan.
Ming-Hsui TsaiDepartment of Otorhinolaryngology, China Medical University Hospital, Taichung, Taiwan.
Yuan-Chien ChenDepartment of Dentistry, China Medical University Hospital, Taichung, Taiwan.
Ying-Chin KoEnvironment-Omics-Diseases Research Centre, China Medical University Hospital, Taichung, Taiwan.
China Medical University Hospital · TWKaohsiung Medical University · TWNational Yang Ming Chiao Tung University · TWChanghua Christian Hospital · TWChina Medical University · TWChung Shan Medical University Hospital · TWMax Planck Institute for Evolutionary Anthropology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A number of genetic variants have been associated with cancer occurrence, however it may be the acquired somatic mutations (SMs) that drive cancer development. This study investigates the potential SMs and related genetic variants associated with the occurrence and development of head and neck squamous cell carcinoma (HNSCC). We identified several SMs in NOTCH1 from whole-exome sequencing and validated them in a 13-year cohort of 128 HNSCC patients using a high-resolution melting analysis and resequencing. Patients who have NOTCH1 SMs show higher 5-year relapse-free recurrence (P = 0.0013) and lower survival proportion (P = 0.0447) when the risk-associated SMs were analysed by Cox proportional hazard models. Interestingly, the NOTCH1 gene rs139994842 that shares linkage with SMs is associated with HNSCC risk (OR = 3.46), increasing when SMs in NOTCH1 are involved (OR = 7.74), and furthermore when there are SMs in conjunction to betel quid chewing (OR = 32.11), which is a related independent environmental risk factor after adjusting for substances use (alcohol, betel quid, cigarettes) and age. The findings indicate that betel quid chewing is highly associated with NOTCH1 SMs (especially with changes in EGF-like domains), and that rs139994842 may potentially serve as an early predictive and prognostic biomarker for the occurrence and development of HNSCC.

Indexed as

Gene Expression Regulation, NeoplasticPolymorphism, Single NucleotideAdultAgedArecaCarcinoma, Squamous CellCase-Control StudiesCohort StudiesDisease-Free SurvivalEnvironmentFemaleGenetic LinkageGenotypeHead and Neck NeoplasmsHumansMaleNOTCH1 protein, humanReceptor, Notch1

Identifiers

PMID27035284
PMCPMC4817511
OpenAlexW2316219266

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.