Evidence map›Paper›PMID 27034373›Full record

ArticleScience (New York, N.Y.)2016

A long noncoding RNA associated with susceptibility to celiac disease.

Ainara Castellanos-Rubio, Nora Fernandez-Jimenez, Radomir Kratchmarov, Xiaobing Luo, Govind Bhagat, Peter H R Green, Robert Schneider, Megerditch Kiledjian, Jose Ramon Bilbao, Sankar Ghosh

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed, 2 pooled it
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 2 syntheses or guidelines pooled it, 258 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Long non-coding RNA transcripts inNon-coding RNA research · 2025
    Review
  15. Article
  16. Article
  17. Computational and structural biotechnology journal · 2024
    Review
  18. Article
  19. Review
  20. mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ainara Castellanos-RubioDepartment of Microbiology and Immunology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.
Nora Fernandez-JimenezDepartment of Genetics, Physical Anthropology, and Animal Physiology, University of the Basque Country (UPV-EHU), BioCruces Research Institute, Leioa 48940, Basque Country, Spain.
Radomir KratchmarovDepartment of Microbiology and Immunology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.
Xiaobing LuoDepartment of Pathology and Cell Biology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.
Govind BhagatCenter for Celiac Disease, Department of Medicine, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA. Alexandria Center for Life Sciences, New York University School of Medicine, New York, NY 10016, USA.
Peter H R GreenAlexandria Center for Life Sciences, New York University School of Medicine, New York, NY 10016, USA.
Robert SchneiderDepartment of Cell Biology and Neuroscience, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
Megerditch KiledjianDepartment of Pathology and Cell Biology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA.
Jose Ramon BilbaoDepartment of Genetics, Physical Anthropology, and Animal Physiology, University of the Basque Country (UPV-EHU), BioCruces Research Institute, Leioa 48940, Basque Country, Spain.
Sankar GhoshDepartment of Microbiology and Immunology, Columbia University, College of Physicians and Surgeons, New York, NY 10032, USA. sg2715@columbia.edu.
Columbia University · USRutgers, The State University of New Jersey · US

Funding

Regulation of Mammalian mRNA DecayR01GM067005 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KILEDJIAN, MEGERDITCH · 2004 to 2022
$5.5M
Regulation of NF-kB and IkB ProteinsR37AI033443 · NIAID · YALE UNIVERSITY · PI GHOSH, SANKAR · 2001 to 2010
$3.4M
Understanding the Role of kB Ras Proteins in Signaling and DevelopmentR01AI093985 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GHOSH, SANKAR · 2011 to 2015
$2.1M
Understanding the Role of a Long Noncoding RNA in Celiac DiseaseR01DK102180 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GHOSH, SANKAR · 2014 to 2018
$1.8M
REGULATION OF NF-KB AND IKB PROTEINSR01AI033443 · NIAID · YALE UNIVERSITY · PI GHOSH, SANKAR · 1993 to 2000
$168k
NIAID NIH HHS R01 AI033443NIAID NIH HHS R01 AI093985NIAID NIH HHS R01-AI093985NIAID NIH HHS R37 AI033443NIAID NIH HHS R37-AI33443NIDDK NIH HHS R01 DK102180NIDDK NIH HHS R01-DK102180NIGMS NIH HHS R01 GM067005NIGMS NIH HHS R01-GM067005
6 · The paper itself

Abstract

Recent studies have implicated long noncoding RNAs (lncRNAs) as regulators of many important biological processes. Here we report on the identification and characterization of a lncRNA, lnc13, that harbors a celiac disease-associated haplotype block and represses expression of certain inflammatory genes under homeostatic conditions. Lnc13 regulates gene expression by binding to hnRNPD, a member of a family of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). Upon stimulation, lnc13 levels are reduced, thereby allowing increased expression of the repressed genes. Lnc13 levels are significantly decreased in small intestinal biopsy samples from patients with celiac disease, which suggests that down-regulation of lnc13 may contribute to the inflammation seen in this disease. Furthermore, the lnc13 disease-associated variant binds hnRNPD less efficiently than its wild-type counterpart, thus helping to explain how these single-nucleotide polymorphisms contribute to celiac disease.

Indexed as

Genetic Predisposition to DiseaseAnimalsBase SequenceCeliac DiseaseDown-RegulationGene Expression RegulationHaplotypesHeterogeneous-Nuclear RibonucleoproteinsHumansInflammationMiceMolecular Sequence DataPolymorphism, Single NucleotideRNA, Long NoncodingHeterogeneous-Nuclear RibonucleoproteinsRNA, Long Noncoding

Identifiers

PMID27034373
PMCPMC4994711
OpenAlexW2320476296

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.