Evidence map›Paper›PMID 27034005›Full record

ArticleOncotarget2016

Phospho-proteomic analyses of B-Raf protein complexes reveal new regulatory principles.

Anja E Eisenhardt, Adrian Sprenger, Michael Röring, Ricarda Herr, Florian Weinberg, Martin Köhler, Sandra Braun, Joachim Orth, Britta Diedrich, Ulrike Lanner and 8 more

Abstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. The mTOR pathway controls phosphorylation of BRAF at T401.Cell communication and signaling : CCS · 2024
    Article
  4. BRAFScience advances · 2023
    Article
  5. Article
  6. Article
  7. Translational cancer research · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Ras-Mediated Activation of the Raf Family Kinases.Cold Spring Harbor perspectives in medicine · 2019
    Review
  16. Nuclear localized Raf1 isoform alters DNA-dependent protein kinase activity and the DNA damage response.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Anja E EisenhardtInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Adrian SprengerCentre for Biological Systems Analysis (ZBSA), Freiburg, Germany.
Michael RöringInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Ricarda HerrInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Florian WeinbergInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Martin KöhlerInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Sandra BraunInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.
Joachim OrthInstitute for Experimental and Clinical Pharmacology and Toxicology, ALU, Freiburg, Germany.
Britta DiedrichCentre for Biological Systems Analysis (ZBSA), Freiburg, Germany.
Ulrike LannerCentre for Biological Systems Analysis (ZBSA), Freiburg, Germany.
Natalja TscherwinskiInstitute of Biology III, Faculty of Biology, ALU, Freiburg, Germany.
Simon SchusterInstitute of Biology III, Faculty of Biology, ALU, Freiburg, Germany.
Nicolas DumazINSERM U976 and Universitéi Paris Diderot, Sorbonne Paris Cité, Paris, France.
Enrico SchmidtInstitute of Biology III, Faculty of Biology, ALU, Freiburg, Germany.
Ralf BaumeisterInstitute of Biology III, Faculty of Biology, ALU, Freiburg, Germany.
Andreas SchlosserInstitute of Biology III, Faculty of Biology, ALU, Freiburg, Germany.
Jörn DengjelCentre for Biological Systems Analysis (ZBSA), Freiburg, Germany.
Tilman BrummerInstitute of Molecular Medicine and Cell Research (IMMZ), Faculty of Medicine, Albert-Ludwigs-University (ALU), Freiburg, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B-Raf represents a critical physiological regulator of the Ras/RAF/MEK/ERK-pathway and a pharmacological target of growing clinical relevance, in particular in oncology. To understand how B-Raf itself is regulated, we combined mass spectrometry with genetic approaches to map its interactome in MCF-10A cells as well as in B-Raf deficient murine embryonic fibroblasts (MEFs) and B-Raf/Raf-1 double deficient DT40 lymphoma cells complemented with wildtype or mutant B-Raf expression vectors. Using a multi-protease digestion approach, we identified a novel ubiquitination site and provide a detailed B-Raf phospho-map. Importantly, we identify two evolutionary conserved phosphorylation clusters around T401 and S419 in the B-Raf hinge region. SILAC labelling and genetic/biochemical follow-up revealed that these clusters are phosphorylated in the contexts of oncogenic Ras, sorafenib induced Raf dimerization and in the background of the V600E mutation. We further show that the vemurafenib sensitive phosphorylation of the T401 cluster occurs in trans within a Raf dimer. Substitution of the Ser/Thr-residues of this cluster by alanine residues enhances the transforming potential of B-Raf, indicating that these phosphorylation sites suppress its signaling output. Moreover, several B-Raf phosphorylation sites, including T401 and S419, are somatically mutated in tumors, further illustrating the importance of phosphorylation for the regulation of this kinase.

Indexed as

AnimalsCell Transformation, NeoplasticGene Expression Regulation, NeoplasticHumansMicePhosphorylationProteomicsProto-Oncogene Proteins B-rafSignal TransductionProto-Oncogene Proteins B-rafBRAFphosphorylationprotein-protein interactionproteomicssorafenib

Identifiers

PMID27034005
PMCPMC5042004

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.