Evidence map›Paper›PMID 27031947›Full record

ArticleJournal of neuroscience methods2016

Quantitative and semi-quantitative measurements of axonal degeneration in tissue and primary neuron cultures.

Andrew Kneynsberg, Timothy J Collier, Fredric P Manfredsson, Nicholas M Kanaan

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

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  14. CSF1R-Mediated Myeloid Cell Depletion Prolongs Lifespan But Aggravates Distinct Motor Symptoms in a Model of Multiple System Atrophy.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
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  17. Long-term monitoring of chronic demyelination and remyelination in a rat ischemic stroke model using macromolecular proton fraction mapping.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2021
    Article
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  20. A Microfluidic Culture Platform to Assess Axon Degeneration.Methods in molecular biology (Clifton, N.J.) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Andrew KneynsbergNeuroscience Program, Michigan State University, East Lansing, MI, USA; Department of Translational Science and Molecular Medicine, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA.
Timothy J CollierNeuroscience Program, Michigan State University, East Lansing, MI, USA; Department of Translational Science and Molecular Medicine, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA; Morris K. Udall Center of Excellence for Parkinson's Disease Research at Michigan State University, USA; Hauenstein Neuroscience Center, Mercy Health Saint Mary's, Grand Rapids, MI, USA.
Fredric P ManfredssonNeuroscience Program, Michigan State University, East Lansing, MI, USA; Department of Translational Science and Molecular Medicine, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA; Hauenstein Neuroscience Center, Mercy Health Saint Mary's, Grand Rapids, MI, USA.
Nicholas M KanaanNeuroscience Program, Michigan State University, East Lansing, MI, USA; Department of Translational Science and Molecular Medicine, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA; Morris K. Udall Center of Excellence for Parkinson's Disease Research at Michigan State University, USA; Hauenstein Neuroscience Center, Mercy Health Saint Mary's, Grand Rapids, MI, USA. Electronic address: nicholas.kanaan@hc.msu.edu.
Mercy Health Saint Mary's · USMichigan State University · US

Funding

STN Deep Brain Stimulation and NeuroprotectionP50NS058830 · NINDS · UNIVERSITY OF CINCINNATI · PI COLLIER, TIMOTHY J. · 2009 to 2015
$5.9M
Tau-induced axonal degeneration in Alzheimer's disease and tauopathiesR01AG044372 · NIA · MICHIGAN STATE UNIVERSITY · PI KANAAN, NICHOLAS M · 2014 to 2018
$1.9M
NIA NIH HHS R01 AG044372NINDS NIH HHS P50 NS058830
6 · The paper itself

Abstract

backgroundAxon viability is critical for maintaining neural connectivity, which is central to neural functionality. Many neurodegenerative diseases (e.g., Parkinson's disease (PD) and Alzheimer's disease) appear to involve extensive axonal degeneration that often precedes somatic loss in affected neural populations. Axonal degeneration involves a number of intracellular pathways and characteristic changes in axon morphology (i.e., swelling, fragmentation, and loss). NEW

methodWe describe a relatively simple set of methods to quantify the axonal degeneration using the 6-hydroxydopamine neurotoxin model of PD in rats and a colchicine-induced model in primary rat neurons. Specifically, approaches are described that use the spaceballs stereological probe for tissue sections and petrimetrics stereological probe for cultured neurons, and image analysis techniques in both tissue sections and cultured neurons.

resultsThese methods provide a mechanism for obtaining quantitative and semi-quantitative data to track the extent of axonal degeneration and may prove useful as outcome measures in studies aimed at preventing or slowing axonal degeneration in disease models. COMPARISON WITH EXISTING

methodsExisting methods of quantification of axonal degeneration use densitometry and manual counts of axonal projections, but they do not utilize the random, unbiased systematic sampling approaches that are characteristic of stereological methods. The ImageJ thresholding analyses described here provide a descriptive method for quantifying the state of axonal degeneration.

conclusionsThese methods provide an efficient and effective means to quantify the extent and state of axonal degeneration in animal tissue and cultured neurons and can be used in other models for the same purposes.

Indexed as

AnimalsAxonsBrainCells, CulturedColchicineDependovirusDisease Models, AnimalGenetic VectorsGreen Fluorescent ProteinsImage Processing, Computer-AssistedMaleMicroscopyNerve DegenerationOxidopamineParkinsonian DisordersRats, Sprague-DawleyColchicineGreen Fluorescent ProteinsOxidopamineAxon degenerationDensitometryDopamineImageJ thresholdingNigrostriatal systemPetrimetricsSpaceballsStereologySubstantia nigra

Identifiers

PMID27031947
PMCPMC4874894
OpenAlexW2332625633

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.