Evidence map›Paper›PMID 27031696›Full record

ArticlePloS one2016

Analysis of the Proteolytic Processing of ABCA3: Identification of Cleavage Site and Involved Proteases.

Nicole Hofmann, Dmitry Galetskiy, Daniela Rauch, Thomas Wittmann, Andreas Marquardt, Matthias Griese, Ralf Zarbock

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Lentiviral-mediated gene complementation to rescue pathogenic ABCA3 variants.American journal of respiratory cell and molecular biology · 2026
    Article
  2. Lentiviral-mediated gene complementation rescues pathogenicbioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. ABCA3 Deficiency-Variant-Specific Response to Hydroxychloroquine.International journal of molecular sciences · 2023
    Article
  6. Quantifying Functional Impairment ofInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Potentiation of ABCA3 lipid transport function by ivacaftor and genistein.Journal of cellular and molecular medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nicole HofmannGerman Centre for Lung Research, Dr. von Hauner Children's Hospital, Ludwig-Maximilians University, 80337, Munich, Germany.
Dmitry GaletskiyProteomics facility, University of Konstanz, 78547, Konstanz, Germany.
Daniela RauchGerman Centre for Lung Research, Dr. von Hauner Children's Hospital, Ludwig-Maximilians University, 80337, Munich, Germany.
Thomas WittmannGerman Centre for Lung Research, Dr. von Hauner Children's Hospital, Ludwig-Maximilians University, 80337, Munich, Germany.
Andreas MarquardtProteomics facility, University of Konstanz, 78547, Konstanz, Germany.
Matthias GrieseGerman Centre for Lung Research, Dr. von Hauner Children's Hospital, Ludwig-Maximilians University, 80337, Munich, Germany.
Ralf ZarbockGerman Centre for Lung Research, Dr. von Hauner Children's Hospital, Ludwig-Maximilians University, 80337, Munich, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

rationaleABCA3 is a lipid transporter in the limiting membrane of lamellar bodies in alveolar type II cells. Mutations in the ABCA3 gene cause respiratory distress syndrome in new-borns and childhood interstitial lung disease. ABCA3 is N-terminally cleaved by an as yet unknown protease, a process believed to regulate ABCA3 activity.

methodsThe exact site where ABCA3 is cleaved was localized using mass spectrometry (MS). Proteases involved in ABCA3 processing were identified using small molecule inhibitors and siRNA mediated gene knockdown. Results were verified by in vitro digestion of a synthetic peptide substrate mimicking ABCA3's cleavage region, followed by MS analysis.

resultsWe found that cleavage of ABCA3 occurs after Lys174 which is located in the proteins' first luminal loop. Inhibition of cathepsin L and, to a lesser extent, cathepsin B resulted in attenuation of ABCA3 cleavage. Both enzymes showed activity against the ABCA3 peptide in vitro with cathepsin L being more active.

conclusionWe show here that, like some other proteins of the lysosomal membrane, ABCA3 is a substrate of cathepsin L. Therefore, cathepsin L may represent a potential target to therapeutically influence ABCA3 activity in ABCA3-associated lung disease.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersCathepsin BCathepsin LCell Line, TumorChromatography, High Pressure LiquidHumansPeptide HydrolasesPeptidesProtein Structure, TertiaryProteolysisRNA InterferenceRNA, Small InterferingTandem Mass SpectrometryABCA3 protein, humanATP-Binding Cassette TransportersCathepsin BCathepsin LPeptide HydrolasesPeptidesRNA, Small Interfering

Identifiers

PMID27031696
PMCPMC4816274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.