Evidence map›Paper›PMID 27031581›Full record

ArticleVirology2016

Capture and characterization of influenza A virus from primary samples using glycan bead arrays.

Miriam Cohen, Christopher J Fisher, Mia L Huang, LeAnn L Lindsay, Magdalena Plancarte, Walter M Boyce, Kamil Godula, Pascal Gagneux

Abstract readValidation Study
In one paragraph

Article in Virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Glycocalyx crowding with mucin mimetics strengthens binding of soluble and virus-associated lectins to host cell glycan receptors.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Adhesion ofFrontiers in molecular biosciences · 2021
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Miriam CohenDepartment of Pathology, Division of Comparative Pathology and Medicine, UC San Diego, La Jolla, CA, USA. Electronic address: micohen@ucsd.edu.
Christopher J FisherDepartment of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, USA.
Mia L HuangDepartment of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, USA.
LeAnn L LindsayDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, UC Davis, Davis, CA, USA.
Magdalena PlancarteDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, UC Davis, Davis, CA, USA.
Walter M BoyceDepartment of Pathology, Microbiology and Immunology, School of Veterinary Medicine, UC Davis, Davis, CA, USA.
Kamil GodulaDepartment of Chemistry and Biochemistry, UC San Diego, La Jolla, CA, USA.
Pascal GagneuxDepartment of Pathology, Division of Comparative Pathology and Medicine, UC San Diego, La Jolla, CA, USA. Electronic address: pgagneux@ucsd.edu.

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008326 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 1989 to 2020
$7.5M
NeoProteoglycans as synthetic materials for regenerative medicine and bioimagingR00EB013446 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GODULA, KAMIL · 2013 to 2015
$722k
NIAID NIH HHS HHSN266200700010CNIAID NIH HHS HHSN272201400008CNIBIB NIH HHS R00 EB013446NIGMS NIH HHS T32 GM008326
6 · The paper itself

Abstract

Influenza A viruses (IAVs) utilize sialylated host glycans as ligands for binding and infection. The glycan-binding preference of IAV hemagglutinin (HA) is an important determinant of host specificity. Propagation of IAV in embryonated chicken eggs and cultured mammalian cells yields viruses with amino acid substitutions in the HA that can alter the binding specificity. Therefore, it is important to determine the binding specificity of IAV directly in primary samples since it reflects the actual tropism of virus in nature. We developed a novel platform for analysis of IAV binding specificity in samples that contain very low virus titers. This platform consists of a high-density flexible glycan display on magnetic beads, which promotes multivalent interactions with the viral HA. Glycan-bound virus is detected by quantifying the viral neuraminidase activity via a fluorogenic reporter, 2'-(4-methylumbelliferyl)-α-d-N-acetylneuraminic acid. This method eliminates the need for labeling the virus and significantly enhances the sensitivity of detection.

Indexed as

MicrospheresAnimalsCloacaDogsDucksInfluenza A virusMadin Darby Canine Kidney CellsMagneticsMucinsNeuraminidasePolysaccharidesSensitivity and SpecificityViral ProteinsMucinsNA protein, influenza A virusNeuraminidasePolysaccharidesViral ProteinsGlycan arrayGlycansInfluenza AMagnetic beadsNeuraminidaseSialic acids

Identifiers

PMID27031581
PMCPMC4860064

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.