Evidence map›Paper›PMID 27031283›Full record

ArticleeLife2016

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle.

Ruzbeh Mosadeghi, Kurt M Reichermeier, Martin Winkler, Anne Schreiber, Justin M Reitsma, Yaru Zhang, Florian Stengel, Junyue Cao, Minsoo Kim, Michael J Sweredoski and 6 more

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Article
  2. Review
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  6. Article
  7. Review
  8. Article
  9. A diverse family of bacterial deubiquitinases is defined by theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Article
  12. Protein neddylation and its role in health and diseases.Signal transduction and targeted therapy · 2024
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ruzbeh MosadeghiKeck School of Medicine, University of Southern California, Los Angeles, United States.
Kurt M ReichermeierDivision of Biology and Biological Engineering, California Instittute of Technology, Pasadena, United States.
Martin WinklerDepartment of Biology, Institute of Biochemistry, Swiss Federal Institute of Technology, Zurich, Switzerland.
Anne SchreiberDepartment of Biology, Institute of Biochemistry, Swiss Federal Institute of Technology, Zurich, Switzerland.
Justin M ReitsmaDivision of Biology and Biological Engineering, California Instittute of Technology, Pasadena, United States.
Yaru ZhangDivision of Biology and Biological Engineering, California Instittute of Technology, Pasadena, United States.
Florian StengelDepartment of Biology, Institute of Molecular Systems Biology, Swiss Federal Institute of Technology, Zürich, Switzerland.
Junyue CaoDivision of Biology and Biological Engineering, California Instittute of Technology, Pasadena, United States.
Minsoo KimDivision of Biology and Biological Engineering, California Instittute of Technology, Pasadena, United States.
Michael J SweredoskiProteome Exploration Lab, Beckman Institute, California Institute of Technology, Pasadena, United States.
Sonja HessProteome Exploration Lab, Beckman Institute, California Institute of Technology, Pasadena, United States.
Alexander LeitnerDepartment of Biology, Institute of Molecular Systems Biology, Swiss Federal Institute of Technology, Zürich, Switzerland.
Ruedi AebersoldDepartment of Biology, Institute of Molecular Systems Biology, Swiss Federal Institute of Technology, Zürich, Switzerland.
Matthias PeterDepartment of Biology, Institute of Biochemistry, Swiss Federal Institute of Technology, Zurich, Switzerland.ORCID 0000-0002-2160-6824
Raymond J DeshaiesDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.ORCID 0000-0002-3671-9354
Radoslav I EnchevDepartment of Biology, Institute of Biochemistry, Swiss Federal Institute of Technology, Zurich, Switzerland.

Funding

Role of CSN in the activity and dynamic cycling of cullin-RING ubiquitin ligasesR01CA164803 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI COHEN, SETH M, DESHAIES, RAYMOND J · 2013 to 2017
$1.6M
Mapping the dynamic assembly of SCF E3 ubiquitin ligases during the cell cycleF32GM112308 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI REITSMA, JUSTIN · 2014 to 2016
$157k
NCI NIH HHS R01 CA164803NIGMS NIH HHS F32 GM112308Wellcome Trust 095951
6 · The paper itself

Abstract

The COP9-Signalosome (CSN) regulates cullin-RING ubiquitin ligase (CRL) activity and assembly by cleaving Nedd8 from cullins. Free CSN is autoinhibited, and it remains unclear how it becomes activated. We combine structural and kinetic analyses to identify mechanisms that contribute to CSN activation and Nedd8 deconjugation. Both CSN and neddylated substrate undergo large conformational changes upon binding, with important roles played by the N-terminal domains of Csn2 and Csn4 and the RING domain of Rbx1 in enabling formation of a high affinity, fully active complex. The RING domain is crucial for deneddylation, and works in part through conformational changes involving insert-2 of Csn6. Nedd8 deconjugation and re-engagement of the active site zinc by the autoinhibitory Csn5 glutamate-104 diminish affinity for Cul1/Rbx1 by ~100-fold, resulting in its rapid ejection from the active site. Together, these mechanisms enable a dynamic deneddylation-disassembly cycle that promotes rapid remodeling of the cellular CRL network.

Indexed as

Cryoelectron MicroscopyCullin ProteinsHumansHydrolysisIntracellular Signaling Peptides and ProteinsKineticsMass SpectrometryModels, MolecularMultienzyme ComplexesNEDD8 ProteinPeptide HydrolasesProtein BindingProtein ConformationUbiquitinUbiquitinsCullin ProteinsIntracellular Signaling Peptides and ProteinsMultienzyme ComplexesNEDD8 ProteinNEDD8 protein, humanPeptide HydrolasesUbiquitinUbiquitinsbiochemistrybiophysicscell biologyCOP9CRLCSNcullinhumanNedd8structural biologyubiquitin

Identifiers

PMID27031283
PMCPMC4878873

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.