Evidence map›Paper›PMID 27030425›Full record

ArticleMolecular bioSystems2016

Correlated S-palmitoylation profiling of Snail-induced epithelial to mesenchymal transition.

Jeannie L Hernandez, Dahvid Davda, Jaimeen D Majmudar, Sang Joon Won, Ashesh Prakash, Alexandria I Choi, Brent R Martin

Abstract read
In one paragraph

Article in Molecular bioSystems, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Crosstalk between protein lipidation and ubiquitination in tumor biology.Apoptosis : an international journal on programmed cell death · 2026
    Review
  2. Article
  3. Quantification of Protein Palmitoylation by Cysteine-SILAC.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  4. Review
  5. BP180/Collagen XVII: A Molecular View.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Protein depalmitoylases.Critical reviews in biochemistry and molecular biology · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Chemoselective ratiometric imaging of protein S-sulfenylation.Chemical communications (Cambridge, England) · 2017
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jeannie L HernandezDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu.
Dahvid DavdaDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu and Program in Chemical Biology, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA.
Jaimeen D MajmudarDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu.
Sang Joon WonProgram in Chemical Biology, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA.
Ashesh PrakashDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu.
Alexandria I ChoiDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu.
Brent R MartinDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA. brentrm@umich.edu and Program in Chemical Biology, University of Michigan, 930 N. University Ave., Ann Arbor, MI 48109, USA.
Ann Arbor Center for Independent Living · USUniversity of Michigan–Ann Arbor · US

Funding

Multiscale chemical approaches to map oxidative stressDP2GM114848 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, BRENT RANDALL · 2014 to 2014
$2.2M
Quantitative chemical proteomics of dynamic palmitoylation in cellsR00CA151460 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, BRENT RANDALL · 2011 to 2013
$769k
NCI NIH HHS R00 CA151460NIGMS NIH HHS DP2 GM114848
6 · The paper itself

Abstract

Epithelial cells form spatially-organized adhesion complexes that establish polarity gradients, regulate cell proliferation, and direct wound healing. As cells accumulate oncogenic mutations, these key tumor suppression mechanisms are disrupted, eliminating many adhesion complexes and bypassing contact inhibition. The transcription factor Snail is often expressed in malignant cancers, where it promotes transcriptional reprogramming to drive epithelial-mesenchymal transition (EMT) and establishes a more invasive state. S-Palmitoylation describes the fatty-acyl post-translational modification of cysteine residues in proteins, and is required for membrane anchoring, trafficking, localization and function of hundreds of proteins involved in cell growth, polarity, and signaling. Since Snail-expression disrupts apico-basolateral cell polarity, we asked if Snail-dependent transformation induces proteome-wide changes in S-palmitoylation. MCF10A breast cancer cells were retrovirally transduced with Snail and correlated proteome-wide changes in protein abundance and S-palmitoylation were profiled by using stable isotope labeling in cell culture with amino acid (SILAC) mass spectrometry. This analysis identified increased levels of proteins involved in migration, glycolysis, and cell junction remodeling, and decreased levels of proteins involved in cell adhesion. Overall, protein S-palmitoylation is highly correlated with protein abundance, yet for a subset of proteins, this correlation is uncoupled. These findings suggest that Snail-overexpression affects the S-palmitoylation cycle of some proteins, which may participate in cell polarity and tumor suppression.

Indexed as

Epithelial-Mesenchymal TransitionCell Line, TumorCellular ReprogrammingClick ChemistryEpithelial CellsGene ExpressionHumansLipoylationMetabolomicsProteomeProteomicsSnail Family Transcription FactorsStaining and LabelingProteomeSnail Family Transcription Factors

Identifiers

PMID27030425
PMCPMC5017304
OpenAlexW2297408565

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.