Evidence map›Paper›PMID 27030294›Full record

ArticleMolecular plant pathology2017

Molecular characterization of XopAG effector AvrGf2 from Xanthomonas fuscans ssp. aurantifolii in grapefruit.

Alberto M Gochez, Deepak Shantharaj, Neha Potnis, Xiaofeng Zhou, Gerald V Minsavage, Frank F White, Nian Wang, Jason C Hurlbert, Jeffrey B Jones

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Genomic insights into two new subspecies ofInternational journal of systematic and evolutionary microbiology · 2024
    Article
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  4. Secrete or perish: The role of secretion systems inComputational and structural biotechnology journal · 2021
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Alberto M GochezCitrus Pathology, EEA INTA Bella Vista, CC5 Bella Vista, Corrientes, Argentina 3432.
Deepak ShantharajDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA 32611.
Neha PotnisDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA 32611.
Xiaofeng ZhouDepartment of Microbiology and Cell Science, University of Florida, Lake Alfred, FL, USA 33850.
Gerald V MinsavageDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA 32611.
Frank F WhiteDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA 32611.
Nian WangDepartment of Microbiology and Cell Science, University of Florida, Lake Alfred, FL, USA 33850.
Jason C HurlbertDepartment of Chemistry, Physics and Geology, Citrus Research and Education Center, Winthrop University, Rock Hill, SC, USA 29733.
Jeffrey B JonesDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA 32611.
University of Florida · USFlorida Department of Citrus · USWinthrop University · US

Funding

Supplement for South Carolina BRIN - 1P20 RR16461P20RR016461 · NCRR · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI DEAVOR, JAMES · 2001 to 2011
$32.3M
NCRR NIH HHS P20 RR016461
6 · The paper itself

Abstract

Xanthomonas fuscans ssp. aurantifolii group C strains exhibit host specificity on different citrus species. The strains possess a type III effector, AvrGf2, belonging to the XopAG effector gene family, which restricts host range on citrus. We dissected the modular nature and mode of action of AvrGf2 in grapefruit resistance. XopAG effectors possess characteristic features, such as a chloroplast localization signal, a cyclophilin-binding domain characteristic amino acid sequence motif (GPLL) and a C-terminal domain-containing CLNAxYD. Mutation of GPLL to AASL in AvrGf2 abolished the elicitation of the hypersensitive response (HR), whereas mutation of only the first amino acid to SPLL delayed the HR in grapefruit. Yeast two-hybrid experiments showed strong interaction of AvrGf2 with grapefruit cyclophilin (GfCyp), whereas AvrGf2-SPLL and AvrGf2-AASL mutants showed weak and no interaction, respectively. Molecular modelling and in silico docking studies for the cyclophilin-AvrGf2 interaction predicted the binding of citrus cyclophilins (CsCyp, GfCyp) to hexameric peptides spanning the cyclophilin-binding domain of AvrGf2 and AvrGf2 mutants (VAGPLL, VASPLL and VAAASL) with affinities equivalent to or better than a positive control peptide (YSPSA) previously demonstrated to bind CsCyp. In addition, the C-terminal domain of XopAG family effectors contains a highly conserved motif, CLNAxYD, which was identified to be crucial for the induction of HR based on site-directed mutagenesis (CLNAxYD to CASAxYD). Our results suggest a model in which grapefruit cyclophilin promotes a conformational change in AvrGf2, thereby triggering the resistance response.

Indexed as

Amino Acid MotifsAmino Acid SequenceBacterial ProteinsBinding SitesChloroplastsCitrus paradisiComputational BiologyCyclophilinsGene SilencingMicroscopy, ConfocalModels, BiologicalModels, MolecularMutagenesis, Site-DirectedProtein BindingProtein DomainsProtein Sorting SignalsBacterial ProteinsCyclophilinsProtein Sorting Signalscitrus cankercitrus cyclophilincitrus resistancehypersensitive response

Identifiers

PMID27030294
PMCPMC6638233
OpenAlexW2322541724

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.