Evidence map›Paper›PMID 27030015›Full record

ArticleScientific reports2016

pH Induced Conformational Transitions in the Transforming Growth Factor β-Induced Protein (TGFβIp) Associated Corneal Dystrophy Mutants.

Elavazhagan Murugan, Anandalakshmi Venkatraman, Zhou Lei, Victoria Mouvet, Rayne Rui Yi Lim, Nandhakumar Muruganantham, Eunice Goh, Gary Swee Lim Peh, Roger W Beuerman, Shyam S Chaurasia and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Case of progressive hyperopia due to flattening of cornea.American journal of ophthalmology case reports · 2018
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Elavazhagan MuruganTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Anandalakshmi VenkatramanTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Zhou LeiProteomics and Microanalysis laboratory, Singapore Eye Research Institute, Singapore.
Victoria MouvetTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Rayne Rui Yi LimTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Nandhakumar MurugananthamOcular Chemistry and Anti-Infectives, Singapore Eye Research Institute, Singapore.
Eunice GohOcular Chemistry and Anti-Infectives, Singapore Eye Research Institute, Singapore.
Gary Swee Lim PehTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Roger W BeuermanDuke-NUS Graduate Medical School, Singapore.
Shyam S ChaurasiaTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Lakshminarayanan RajamaniDuke-NUS Graduate Medical School, Singapore.
Jodhbir S MehtaTissue Engineering and Stem Cell Group, Singapore Eye Research Institute, Singapore.
Singapore Eye Research Institute · SGDuke-NUS Medical School · SGSingapore National Eye Center · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most stromal corneal dystrophies are associated with aggregation and deposition of the mutated transforming growth factor-β induced protein (TGFβIp). The 4(th)_FAS1 domain of TGFβIp harbors ~80% of the mutations that forms amyloidogenic and non-amyloidogenic aggregates. To understand the mechanism of aggregation and the differences between the amyloidogenic and non-amyloidogenic phenotypes, we expressed the 4(th)_FAS1 domains of TGFβIp carrying the mutations R555W (non-amyloidogenic) and H572R (amyloidogenic) along with the wild-type (WT). R555W was more susceptible to acidic pH compared to H572R and displayed varying chemical stabilities with decreasing pH. Thermal denaturation studies at acidic pH showed that while WT did not undergo any conformational transition, the mutants exhibited a clear pH-dependent irreversible conversion from αβ conformation to β-sheet oligomers. The β-oligomers of both mutants were stable at physiological temperature and pH. Electron microscopy and dynamic light scattering studies showed that β-oligomers of H572R were larger compared to R555W. The β-oligomers of both mutants were cytotoxic to primary human corneal stromal fibroblast (pHCSF) cells. The β-oligomers of both mutants exhibit variations in their morphologies, sizes, thermal and chemical stabilities, aggregation patterns and cytotoxicities.

Indexed as

MutationAmino Acid SequenceAmyloidogenic ProteinsbetaIG-H3 ProteinCell SurvivalCloning, MolecularCorneal Dystrophies, HereditaryCorneal StromaEscherichia coliExtracellular Matrix ProteinsFibroblastsGene ExpressionHumansHydrogen-Ion ConcentrationPrimary Cell CultureProtein DenaturationAmyloidogenic ProteinsbetaIG-H3 ProteinExtracellular Matrix ProteinsRecombinant ProteinsTransforming Growth Factor beta

Identifiers

PMID27030015
PMCPMC4814907
OpenAlexW2332428787

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.