Evidence map›Paper›PMID 27029836›Full record

ArticleBiology letters2016

CENP-B box, a nucleotide motif involved in centromere formation, occurs in a New World monkey.

Aorarat Suntronpong, Kazuto Kugou, Hiroshi Masumoto, Kornsorn Srikulnath, Kazuhiko Ohshima, Hirohisa Hirai, Akihiko Koga

Open access · bronzeAbstract read
In one paragraph

Article in Biology letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  4. Article
  5. Article
  6. Molecular evolution of the mammalian kinetochore complex.bioRxiv : the preprint server for biology · 2024
    Article
  7. Fast satellite DNA evolution in Nothobranchius annual killifishes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
    Article
  8. Article
  9. The Sequence Dependent Nanoscale Structure of CENP-A Nucleosomes.International journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Aorarat SuntronpongPrimate Research Institute, Kyoto University, Inuyama 484-8506, Japan Faculty of Science, Kasetsart University, Bangkok 10900, Thailand.ORCID http://orcid.org/0000-0001-7787-2059
Kazuto KugouDepartment of Frontier Research, Kazusa DNA Research Institute, Kisarazu 292-0818, Japan.ORCID http://orcid.org/0000-0002-7690-1249
Hiroshi MasumotoDepartment of Frontier Research, Kazusa DNA Research Institute, Kisarazu 292-0818, Japan.ORCID http://orcid.org/0000-0001-6960-4417
Kornsorn SrikulnathFaculty of Science, Kasetsart University, Bangkok 10900, Thailand.ORCID http://orcid.org/0000-0002-5985-7258
Kazuhiko OhshimaGraduate School of Bioscience, Nagahama Institute of Bio-Science and Technology, Nagahama 526-0829, Japan.ORCID http://orcid.org/0000-0001-8437-4744
Hirohisa HiraiPrimate Research Institute, Kyoto University, Inuyama 484-8506, Japan.ORCID http://orcid.org/0000-0003-0951-1950
Akihiko KogaPrimate Research Institute, Kyoto University, Inuyama 484-8506, Japan koga.akihiko.5n@kyoto-u.ac.jp.ORCID http://orcid.org/0000-0001-7921-7496
Kasetsart University · THKazusa DNA Research Institute · JPKyoto University · JPNagahama Institute of Bio-Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Centromere protein B (CENP-B) is one of the major proteins involved in centromere formation, binding to centromeric repetitive DNA by recognizing a 17 bp motif called the CENP-B box. Hominids (humans and great apes) carry large numbers of CENP-B boxes in alpha satellite DNA (AS, the major centromeric repetitive DNA of simian primates). Only negative results have been reported regarding the presence of the CENP-B box in other primate taxa. Consequently, it is widely believed that the CENP-B box is confined, within primates, to the hominids. We report here that the common marmoset, a New World monkey, contains an abundance of CENP-B boxes in its AS. First, in a long contig sequence we constructed and analysed, we identified the motif in 17 of the 38 alpha satellite repeat units. We then sequenced terminal regions of additional clones and found the motif in many of them. Immunostaining of marmoset cells demonstrated that CENP-B binds to DNA in the centromeric regions of chromosomes. Therefore, functional CENP-B boxes are not confined to hominids. Our results indicate that the efficiency of identification of the CENP-B box may depend largely on the sequencing methods used, and that the CENP-B box in centromeric repetitive DNA may be more common than researchers previously thought.

Indexed as

Nucleotide MotifsAnimalsBase SequenceCallithrixCentromereCentromere Protein BCentromere Protein Balpha satellite DNAcentromeric repetitive DNAmarmosetmolecular evolutionprimates

Identifiers

PMID27029836
PMCPMC4843215
OpenAlexW2323651502

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.