ArticleScientific reports2016
Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 3 of them syntheses that pooled it.
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Who cites it
104 citing papers in PubMed, 3 syntheses or guidelines pooled it, 225 citations in OpenAlex.
- Functional annotation and meta-analysis of maize transcriptomes reveal genes involved in biotic and abiotic stress.BMC genomics · 2024Pooled it
- Gene network modules associated with abiotic stress response in tolerant rice genotypes identified by transcriptome meta-analysis.Functional & integrative genomics · 2020Pooled it
- A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.International journal of molecular sciences · 2019Pooled it
- Comparative transcriptome analysis reveals key genes and regulatory networks regulating flowering in rice varieties with different photoperiod sensitivity.BMC plant biology · 2026Article
- A Dual Perspective on Physio-molecular Insights Points Towards Ion Homeostasis as a Probable Pathway for Salt Tolerance in Pigeonpea [Cajanus Cajan (Millspaugh (L.)].Applied biochemistry and biotechnology · 2026Article
- Transcriptomic analysis of Thai rice varieties at the reproductive stage uncovers potential genetic determinants of salt tolerance.BMC plant biology · 2025Article
- Molecular basis of salinity stress tolerance in wheat: implications for crop resilience.Plant molecular biology · 2025Review
- OsWNK9 regulates the expression of key transcription factors, phytohormonal, and transporters genes to improve salinity stress tolerance in rice.Scientific reports · 2025Article
- Salinity Stress Induces Phase Separation of Plant BARENTSZ to Form Condensates.Rice (New York, N.Y.) · 2025Article
- Neutral transcriptome rewiring promotes quantitative disease resistance evolvability at the species level.The Plant cell · 2025Article
- Transcriptomic exploration yields novel perspectives on the regulatory network underlying trichome initiation inFrontiers in plant science · 2025Article
- Desert-adapted tomato Solanum pennellii exhibit unique regulatory elements and stress-ready transcriptome patterns to drought.PloS one · 2025Article
- RiceMetaSys: Drought-miR, a one-stop solution for drought responsive miRNAs-mRNA module in rice.Database : the journal of biological databases and curation · 2024Article
- RNAi-Mediated Suppression ofInternational journal of molecular sciences · 2024Article
- Mechanisms of Plant Epigenetic Regulation in Response to Plant Stress: Recent Discoveries and Implications.Plants (Basel, Switzerland) · 2024Review
- Comparative transcriptomic data confirm the findings of dehydration stress-induced redox biology of indigenous aromatic rice cultivars.3 Biotech · 2023Article
- Panicle transcriptome of high-yield mutant indica rice reveals physiological mechanisms and novel candidate regulatory genes for yield under reproductive stage drought stress.BMC plant biology · 2023Article
- Metabolome plasticity in 241 Arabidopsis thaliana accessions reveals evolutionary cold adaptation processes.Plant physiology · 2023Article
- Seed Halopriming: A Promising Strategy to Induce Salt Tolerance in Indonesian Pigmented Rice.Plants (Basel, Switzerland) · 2023Article
- Comprehensive transcriptomic analysis of three varieties with different brown planthopper-resistance identifies leaf sheath lncRNAs in rice.BMC plant biology · 2023Article
44 more citing papers are in PubMed but not listed here.
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3 authors at 2 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Drought and salinity are the major environmental factors that affect rice productivity. Comparative transcriptome analysis between tolerant and sensitive rice cultivars can provide insights into the regulatory mechanisms involved in these stress responses. In this study, the comparison of transcriptomes of a drought-tolerant [Nagina 22 (N22)] and a salinity-tolerant (Pokkali) rice cultivar with IR64 (susceptible cultivar) revealed variable transcriptional responses under control and stress conditions. A total of 801 and 507 transcripts were exclusively differentially expressed in N22 and Pokkali rice cultivars, respectively, under stress conditions. Gene ontology analysis suggested the enrichment of transcripts involved in response to abiotic stress and regulation of gene expression in stress-tolerant rice cultivars. A larger number of transcripts encoding for members of NAC and DBP transcription factor (TF) families in N22 and members of bHLH and C2H2 TF families in Pokkali exhibited differential regulation under desiccation and salinity stresses, respectively. Transcripts encoding for thioredoxin and involved in phenylpropanoid metabolism were up-regulated in N22, whereas transcripts involved in wax and terpenoid metabolism were up-regulated in Pokkali. Overall, common and cultivar-specific stress-responsive transcripts identified in this study can serve as a helpful resource to explore novel candidate genes for abiotic stress tolerance in rice.
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