Evidence map›Paper›PMID 27029646›Full record

ArticleScientific reports2016

Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7.

Leticia Maria Zanphorlin, Priscila Oliveira de Giuseppe, Rodrigo Vargas Honorato, Celisa Caldana Costa Tonoli, Juliana Fattori, Elaine Crespim, Paulo Sergio Lopes de Oliveira, Roberto Ruller, Mario Tyago Murakami

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 67 citations in OpenAlex.

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  19. The C-Domain of OleuropeinPlant physiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Leticia Maria ZanphorlinBrazilian Bioethanol Science and Technology Laboratory, Campinas, São Paulo, Brazil.
Priscila Oliveira de GiuseppeBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Rodrigo Vargas HonoratoBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Celisa Caldana Costa TonoliBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Juliana FattoriBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Elaine CrespimBrazilian Bioethanol Science and Technology Laboratory, Campinas, São Paulo, Brazil.
Paulo Sergio Lopes de OliveiraBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Roberto RullerBrazilian Bioethanol Science and Technology Laboratory, Campinas, São Paulo, Brazil.
Mario Tyago MurakamiBrazilian Biosciences National Laboratory from the National Center for Research in Energy and Materials, Campinas, São Paulo, Brazil.
Brazilian Biosciences National Laboratory · BRBrazilian Center for Research in Energy and Materials · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Psychrophilic enzymes evolved from a plethora of structural scaffolds via multiple molecular pathways. Elucidating their adaptive strategies is instrumental to understand how life can thrive in cold ecosystems and to tailor enzymes for biotechnological applications at low temperatures. In this work, we used X-ray crystallography, in solution studies and molecular dynamics simulations to reveal the structural basis for cold adaptation of the GH1 β-glucosidase from Exiguobacterium antarcticum B7. We discovered that the selective pressure of low temperatures favored mutations that redesigned the protein surface, reduced the number of salt bridges, exposed more hydrophobic regions to the solvent and gave rise to a tetrameric arrangement not found in mesophilic and thermophilic homologues. As a result, some solvent-exposed regions became more flexible in the cold-adapted tetramer, likely contributing to enhance enzymatic activity at cold environments. The tetramer stabilizes the native conformation of the enzyme, leading to a 10-fold higher activity compared to the disassembled monomers. According to phylogenetic analysis, diverse adaptive strategies to cold environments emerged in the GH1 family, being tetramerization an alternative, not a rule. These findings reveal a novel strategy for enzyme cold adaptation and provide a framework for the semi-rational engineering of β-glucosidases aiming at cold industrial processes.

Indexed as

PhylogenyAdaptation, PhysiologicalAquatic OrganismsBacillotaBacterial Proteinsbeta-GlucosidaseCloning, MolecularCold TemperatureCrystallography, X-RayEnzyme StabilityEscherichia coliGene ExpressionHydrophobic and Hydrophilic InteractionsKineticsMolecular Dynamics SimulationProtein DomainsBacterial Proteinsbeta-GlucosidaseRecombinant Proteins

Identifiers

PMID27029646
PMCPMC4815018
OpenAlexW2314062758

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.