Evidence map›Paper›PMID 27029405›Full record

ArticleNature communications2016

Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.

Ruben G de Bruin, Lily Shiue, Jurriën Prins, Hetty C de Boer, Anjana Singh, W Samuel Fagg, Janine M van Gils, Jacques M G J Duijs, Sol Katzman, Adriaan O Kraaijeveld and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 124 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Estradiol Promotes Endometriosis ProgressionCurrent pharmaceutical biotechnology · 2026
    Article
  6. Review
  7. Macrophage Zc3h12c Limits Tissue Inflammation and Injury via Alternative Splicing of Pre-mRNA.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Get Spliced: Uniting Alternative Splicing and Arthritis.International journal of molecular sciences · 2024
    Review
  15. Article
  16. Dynamic changes in RNA mCellular and molecular life sciences : CMLS · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 5 countries.

Ruben G de BruinEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Lily ShiueCenter for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, University of California, 1156 High Street, Santa Cruz, California 95064, USA.
Jurriën PrinsEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Hetty C de BoerEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Anjana SinghDepartment of Pathology, CARIM, Academic University Hospital Maastricht, P. Debyelaan 25, 6229HX Maastricht, The Netherlands.
W Samuel FaggCenter for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, University of California, 1156 High Street, Santa Cruz, California 95064, USA.
Janine M van GilsEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Jacques M G J DuijsEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Sol KatzmanCenter for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, University of California, 1156 High Street, Santa Cruz, California 95064, USA.
Adriaan O KraaijeveldDepartment of Cardiology, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Stefan BöhringerDepartment of Medical Biostatistics, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Wai Y LeungDepartment of Sequencing Analysis Support Core, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-1041-1885
Szymon M KielbasaDepartment of Medical Biostatistics, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
John P DonahueCenter for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, University of California, 1156 High Street, Santa Cruz, California 95064, USA.
Patrick H J van der ZandeEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Rick SijbomEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Carla M A van AlemDepartment of Internal Medicine (Nephrology), Leiden University Medical Center, Albinusdreef 2, C7-36, PO Box 9600, 2300RC, Leiden The Netherlands.
Ilze BotDivision of Biopharmaceutics, Leiden/Amsterdam Center for Drug Research, Leiden University, Einsteinweg 55, 2333CC Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-1242-1959
Cees van KootenDepartment of Internal Medicine (Nephrology), Leiden University Medical Center, Albinusdreef 2, C7-36, PO Box 9600, 2300RC, Leiden The Netherlands.
J Wouter JukemaDepartment of Cardiology, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Hilde Van EschDepartment of Human Genetics, University Hospitals Leuven, Herestraat 43, 3000 Leuven, Belgium.
Ton J RabelinkEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Hilal KazanDepartment of Computer Engineering, Antalya International University, Universit Cad. No.2, Antalya 07190, Turkey.
Erik A L BiessenDepartment of Pathology, CARIM, Academic University Hospital Maastricht, P. Debyelaan 25, 6229HX Maastricht, The Netherlands.
Manuel AresCenter for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, University of California, 1156 High Street, Santa Cruz, California 95064, USA.ORCID http://orcid.org/0000-0002-2552-9168
Anton Jan van ZonneveldEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Eric P van der VeerEinthoven Laboratory of Experimental Vascular Medicine, Leiden University Medical Center, Albinusdreef 2, 2300RC Leiden, The Netherlands.
Leiden University Medical Center · NLUniversity of California, Santa Cruz · USLeiden University · NLAntalya Bilim University · TRCentre For Human Genetics · INMaastricht University Medical Centre · NL

Funding

STRUCTURE/FUNCTION OF YEAST SMALL NUCLEAR RNPSR01GM040478 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI ARES, MANUEL · 1988 to 2021
$10.8M
Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
NIGMS NIH HHS GM040478NIGMS NIH HHS R01 GM040478NIGMS NIH HHS T32 GM008646
6 · The paper itself

Abstract

A hallmark of inflammatory diseases is the excessive recruitment and influx of monocytes to sites of tissue damage and their ensuing differentiation into macrophages. Numerous stimuli are known to induce transcriptional changes associated with macrophage phenotype, but posttranscriptional control of human macrophage differentiation is less well understood. Here we show that expression levels of the RNA-binding protein Quaking (QKI) are low in monocytes and early human atherosclerotic lesions, but are abundant in macrophages of advanced plaques. Depletion of QKI protein impairs monocyte adhesion, migration, differentiation into macrophages and foam cell formation in vitro and in vivo. RNA-seq and microarray analysis of human monocyte and macrophage transcriptomes, including those of a unique QKI haploinsufficient patient, reveal striking changes in QKI-dependent messenger RNA levels and splicing of RNA transcripts. The biological importance of these transcripts and requirement for QKI during differentiation illustrates a central role for QKI in posttranscriptionally guiding macrophage identity and function.

Indexed as

RNA SplicingAnimalsAtherosclerosisCell DifferentiationFoam CellsGene Expression RegulationHumansMacrophagesMiceModels, BiologicalModels, GeneticMonocytesRNA-Binding ProteinsRNA, MessengerQKI protein, humanRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID27029405
PMCPMC4821877
OpenAlexW2324220357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.