Evidence map›Paper›PMID 27029354›Full record

ArticleJournal of experimental botany2016

Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence.

Hsing-Yi Cho, Tuan-Nan Wen, Ying-Tsui Wang, Ming-Che Shih

Abstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

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  12. Cellular energy sensor SnRK1 suppresses salicylic acid-dependent and -independent defenses and bacterial resistance inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Perception and processing of stress signals by plant mitochondria.The Plant journal : for cell and molecular biology · 2024
    Review
  15. Review
  16. Review
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  18. Review
  19. ATP homeostasis and signaling in plants.Plant communications · 2024
    Review
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hsing-Yi ChoMolecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung-Hsing University, Academia Sinica, Taiwan Agricultural Biotechnology Research Center, Academia Sinica, Taiwan Graduate Institute of Biotechnology, National Chung-Hsing University, Taiwan.
Tuan-Nan WenInstitute of Plant and Microbial Biology, Academia Sinica, Taiwan.
Ying-Tsui WangAgricultural Biotechnology Research Center, Academia Sinica, Taiwan.
Ming-Che ShihMolecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung-Hsing University, Academia Sinica, Taiwan Agricultural Biotechnology Research Center, Academia Sinica, Taiwan Biotechnology Center, National Chung-Hsing University, Taichung, Taiwan mcshih@gate.sinica.edu.tw.ORCID 0000-0002-7590-793X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SNF1 RELATED PROTEIN KINASE 1 (SnRK1) is proposed to be a central integrator of the plant stress and energy starvation signalling pathways. We observed that the Arabidopsis SnRK1.1 dominant negative mutant (SnRK1.1 (K48M) ) had lower tolerance to submergence than the wild type, suggesting that SnRK1.1-dependent phosphorylation of target proteins is important in signalling pathways triggered by submergence. We conducted quantitative phosphoproteomics and found that the phosphorylation levels of 57 proteins increased and the levels of 27 proteins decreased in Col-0 within 0.5-3h of submergence. Among the 57 proteins with increased phosphorylation in Col-0, 38 did not show increased phosphorylation levels in SnRK1.1 (K48M) under submergence. These proteins are involved mainly in sugar and protein synthesis. In particular, the phosphorylation of MPK6, which is involved in regulating ROS responses under abiotic stresses, was disrupted in the SnRK1.1 (K48M) mutant. In addition, PTP1, a negative regulator of MPK6 activity that directly dephosphorylates MPK6, was also regulated by SnRK1.1. We also showed that energy conservation was disrupted in SnRK1.1 (K48M) , mpk6, and PTP1 (S7AS8A) under submergence. These results reveal insights into the function of SnRK1 and the downstream signalling factors related to submergence.

Indexed as

Adenosine MonophosphateAdenosine TriphosphateArabidopsisArabidopsis ProteinsEnergy MetabolismImmersionPhosphorylationProtein Serine-Threonine KinasesProteomicsSignal TransductionStress, PhysiologicalAdenosine MonophosphateAdenosine TriphosphateArabidopsis ProteinsAt3g01090 protein, ArabidopsisProtein Serine-Threonine KinasesEnergy starvationphosphoproteomicsSnRK1submergence.

Identifiers

PMID27029354
PMCPMC4861021

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.