Evidence map›Paper›PMID 27029353›Full record

ArticleJournal of experimental botany2016

The calmodulin-like proteins AtCML4 and AtCML5 are single-pass membrane proteins targeted to the endomembrane system by an N-terminal signal anchor sequence.

Henning Ruge, Sandra Flosdorff, Ingo Ebersberger, Fatima Chigri, Ute C Vothknecht

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Chloroplast Calcium Signaling in the Spotlight.Frontiers in plant science · 2020
    Review
  9. Article
  10. Pharmacological Strategies for Manipulating Plant CaInternational journal of molecular sciences · 2018
    Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Henning RugeDepartment of Biology I, Faculty of Biology, LMU Munich, Großhaderner Straße 2-4, D-82152 Planegg, Germany.
Sandra FlosdorffDepartment of Biology I, Faculty of Biology, LMU Munich, Großhaderner Straße 2-4, D-82152 Planegg, Germany.
Ingo EbersbergerDepartment for Applied Bioinformatics, Institute for Cell Biology and Neuroscience, Goethe-University Frankfurt, Max-von-Laue-Straße 13, 60438 Frankfurt am Main, Germany.
Fatima ChigriDepartment of Biology I, Faculty of Biology, LMU Munich, Großhaderner Straße 2-4, D-82152 Planegg, Germany Center for Integrated Protein Science (Munich) at the Department of Biology I, Faculty of Biology, LMU Munich, D-81377 Munich, Germany.
Ute C VothknechtDepartment of Biology I, Faculty of Biology, LMU Munich, Großhaderner Straße 2-4, D-82152 Planegg, Germany Center for Integrated Protein Science (Munich) at the Department of Biology I, Faculty of Biology, LMU Munich, D-81377 Munich, Germany vothknecht@bio.lmu.de.
Ludwig-Maximilians-Universität München · DECenter for Integrated Protein Science Munich · DEGoethe University Frankfurt · DELMU Klinikum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calmodulins (CaMs) are important mediators of Ca(2+) signals that are found ubiquitously in all eukaryotic organisms. Plants contain a unique family of calmodulin-like proteins (CMLs) that exhibit greater sequence variance compared to canonical CaMs. The Arabidopsis thaliana proteins AtCML4 and AtCML5 are members of CML subfamily VII and possess a CaM domain comprising the characteristic double pair of EF-hands, but they are distinguished from other members of this subfamily and from canonical CaMs by an N-terminal extension of their amino acid sequence. Transient expression of yellow fluorescent protein-tagged AtCML4 and AtCML5 under a 35S-promoter in Nicotiana benthamiana leaf cells revealed a spherical fluorescence pattern. This pattern was confirmed by transient expression in Arabidopsis protoplasts under the native promoter. Co-localization analyses with various endomembrane marker proteins suggest that AtCML4 and AtCML5 are localized to vesicular structures in the interphase between Golgi and the endosomal system. Further studies revealed AtCML5 to be a single-pass membrane protein that is targeted into the endomembrane system by an N-terminal signal anchor sequence. Self-assembly green fluorescent protein and protease protection assays support a topology with the CaM domain exposed to the cytosolic surface and not the lumen of the vesicles, indicating that AtCML5 could sense Ca(2+) signals in the cytosol. Phylogenetic analysis suggests that AtCML4 and AtCML5 are closely related paralogues originating from a duplication event within the Brassicaceae family. CML4/5-like proteins seem to be universally present in eudicots but are absent in some monocots. Together these results show that CML4/5-like proteins represent a flowering plant-specific subfamily of CMLs with a potential function in vesicle transport within the plant endomembrane system.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCalcium-Binding ProteinsEndosomesGolgi ApparatusMembrane ProteinsNicotianaPhylogenyPlants, Genetically ModifiedProtein Sorting SignalsSequence AlignmentArabidopsis ProteinsCalcium-Binding ProteinsCML4 protein, ArabidopsisCML5 protein, ArabidopsisMembrane ProteinsProtein Sorting SignalsArabidopsiscalcium signallingcalmodulinendomembrane systemendosomesGolgivesicle transport.

Identifiers

PMID27029353
PMCPMC4915527
OpenAlexW2315107824

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.