ArticleScientific reports2016
Landscape of genomic diversity and trait discovery in soybean.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.
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Who cites it
82 citing papers in PubMed.
- Genome-wide signatures of selection and genetic diversity reveal the impact of modern breeding on Brazilian soybean.Molecular breeding : new strategies in plant improvement · 2026Article
- Genomic Signatures of Artificial Selection Underlying Oil Content Differentiation in Chinese and Uruguayan Soybean Germplasm.Plants (Basel, Switzerland) · 2026Article
- Molecular polymorphisms that underlie trait variation in crops: Lessons learned from soybean.The plant genome · 2026Review
- Dissecting seed composition QTL from wild soybean: fine-mapping, candidate gene identification, and evaluation of introgression effects on agronomic performance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Review
- Uncovering the genetic landscape of soybean accessions from Kazakhstan in comparison with global germplasm using whole genome resequencing.BMC genomics · 2025Article
- Landscape of rare-allele variants in cultivated and wild soybean genomes.The plant genome · 2025Article
- Genome-wide exploration of soybean domestication traits: integrating association mapping and SNP × SNP interaction analyses.Plant molecular biology · 2025Article
- The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars.Nature genetics · 2025Article
- Exploring genomic feature selection: A comparative analysis of GWAS and machine learning algorithms in a large-scale soybean dataset.The plant genome · 2025Article
- Discovery of two tightly linked soybean genes at the qSCN10 (O) locus conferring broad-spectrum resistance to soybean cyst nematode.Communications biology · 2025Article
- Identification of superior haplotypes and candidate gene for seed size-related traits in soybean (Molecular breeding : new strategies in plant improvement · 2025Article
- Soybean genomics research community strategic plan: A vision for 2024-2028.The plant genome · 2024Article
- A novel natural variation in the promoter of GmCHX1 regulates conditional gene expression to improve salt tolerance in soybean.Journal of experimental botany · 2024Article
- k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean.The plant genome · 2023Article
- Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans.The plant genome · 2023Article
- A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes.Journal of advanced research · 2022Article
- Soybean genetic resources contributing to sustainable protein production.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- Whole-genome resequencing reveals signature of local adaptation and divergence in wild soybean.Evolutionary applications · 2022Article
- Genetic relationships and genome selection signatures between soybean cultivars from Brazil and United States after decades of breeding.Scientific reports · 2022Article
22 more citing papers are in PubMed but not listed here.
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17 authors.
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Abstract
Cultivated soybean [Glycine max (L.) Merr.] is a primary source of vegetable oil and protein. We report a landscape analysis of genome-wide genetic variation and an association study of major domestication and agronomic traits in soybean. A total of 106 soybean genomes representing wild, landraces, and elite lines were re-sequenced at an average of 17x depth with a 97.5% coverage. Over 10 million high-quality SNPs were discovered, and 35.34% of these have not been previously reported. Additionally, 159 putative domestication sweeps were identified, which includes 54.34 Mbp (4.9%) and 4,414 genes; 146 regions were involved in artificial selection during domestication. A genome-wide association study of major traits including oil and protein content, salinity, and domestication traits resulted in the discovery of novel alleles. Genomic information from this study provides a valuable resource for understanding soybean genome structure and evolution, and can also facilitate trait dissection leading to sequencing-based molecular breeding.
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