Evidence map›Paper›PMID 27028297›Full record

ArticlePloS one2016

A Complex Systems Approach to Causal Discovery in Psychiatry.

Glenn N Saxe, Alexander Statnikov, David Fenyo, Jiwen Ren, Zhiguo Li, Meera Prasad, Dennis Wall, Nora Bergman, Ernestine C Briggs, Constantin Aliferis

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Glenn N SaxeDepartment of Child and Adolescent Psychiatry, New York University School of Medicine, New York, New York, United States of America.
Alexander StatnikovCenter for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York, United States of America.
David FenyoCenter for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York, United States of America.
Jiwen RenDepartment of Child and Adolescent Psychiatry, New York University School of Medicine, New York, New York, United States of America.
Zhiguo LiCenter for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York, United States of America.
Meera PrasadMemorial Sloan Kettering Cancer Center, New York, New York, United States of America.
Dennis WallSystems Medicine in the Department of Pediatrics, Stanford University School of Medicine, Stanford, California, United States of America.
Nora BergmanDepartment of Child and Adolescent Psychiatry, New York University School of Medicine, New York, New York, United States of America.
Ernestine C BriggsDepartment of Psychiatry, Duke University School of Medicine, Durham, North Carolina, United States of America.
Constantin AliferisInstitute for Health Informatics, University of Minnesota, Minneapolis, Minnesota, United States of America.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
PTSD in Children with Injuries: A Longitudinal StudyR01MH063247 · NIMH · BOSTON MEDICAL CENTER · PI SAXE, GLENN N · 2003 to 2007
$1.9M
Network Science Methodology for Assessing PTSD RiskR21MH086309 · NIMH · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAXE, GLENN N · 2009 to 2010
$443k
NCI NIH HHS P30 CA008748NIMH NIH HHS R01 MH063247NIMH NIH HHS R21 MH086309
6 · The paper itself

Abstract

Conventional research methodologies and data analytic approaches in psychiatric research are unable to reliably infer causal relations without experimental designs, or to make inferences about the functional properties of the complex systems in which psychiatric disorders are embedded. This article describes a series of studies to validate a novel hybrid computational approach--the Complex Systems-Causal Network (CS-CN) method-designed to integrate causal discovery within a complex systems framework for psychiatric research. The CS-CN method was first applied to an existing dataset on psychopathology in 163 children hospitalized with injuries (validation study). Next, it was applied to a much larger dataset of traumatized children (replication study). Finally, the CS-CN method was applied in a controlled experiment using a 'gold standard' dataset for causal discovery and compared with other methods for accurately detecting causal variables (resimulation controlled experiment). The CS-CN method successfully detected a causal network of 111 variables and 167 bivariate relations in the initial validation study. This causal network had well-defined adaptive properties and a set of variables was found that disproportionally contributed to these properties. Modeling the removal of these variables resulted in significant loss of adaptive properties. The CS-CN method was successfully applied in the replication study and performed better than traditional statistical methods, and similarly to state-of-the-art causal discovery algorithms in the causal detection experiment. The CS-CN method was validated, replicated, and yielded both novel and previously validated findings related to risk factors and potential treatments of psychiatric disorders. The novel approach yields both fine-grain (micro) and high-level (macro) insights and thus represents a promising approach for complex systems-oriented research in psychiatry.

Indexed as

AdolescentChildCluster AnalysisHumansModels, PsychologicalPsychiatrySystems AnalysisWounds and Injuries

Identifiers

PMID27028297
PMCPMC4814084

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.