Evidence map›Paper›PMID 27026703›Full record

ArticleThe Journal of biological chemistry2016

The Structure of the Complex between Yeast Frataxin and Ferrochelatase: CHARACTERIZATION AND PRE-STEADY STATE REACTION OF FERROUS IRON DELIVERY AND HEME SYNTHESIS.

Christopher Söderberg, Mallory E Gillam, Eva-Christina Ahlgren, Gregory A Hunter, Oleksandr Gakh, Grazia Isaya, Gloria C Ferreira, Salam Al-Karadaghi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Making and breaking heme.Current opinion in structural biology · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Roles and maturation of iron-sulfur proteins in plastids.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  13. Article
  14. Article
  15. Unraveling the Role of Heme in Neurodegeneration.Frontiers in neuroscience · 2018
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Christopher SöderbergFrom the Center for Molecular Protein Science, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
Mallory E GillamDepartment of Molecular Medicine, Morsani College of Medicine and.
Eva-Christina AhlgrenFrom the Center for Molecular Protein Science, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden.
Gregory A HunterDepartment of Molecular Medicine, Morsani College of Medicine and.
Oleksandr Gakhthe Departments of Pediatric and Adolescent Medicine and Biochemistry and Molecular Biology, Mayo Clinic, College of Medicine, Rochester, Minnesota 55905.
Grazia Isayathe Departments of Pediatric and Adolescent Medicine and Biochemistry and Molecular Biology, Mayo Clinic, College of Medicine, Rochester, Minnesota 55905.
Gloria C FerreiraDepartment of Molecular Medicine, Morsani College of Medicine and the Department of Chemistry, University of South Florida, Tampa, Florida 33612, and gferreir@health.usf.edu.
Salam Al-KaradaghiFrom the Center for Molecular Protein Science, Department of Chemistry, Lund University, SE-221 00 Lund, Sweden, salam.al-karadaghi@biochemistry.lu.se.
Lund University · SEUniversity of South Florida · USMayo Clinic · US

Funding

NEW DETERMINANTS OF MTDNA INTEGRITY IN YEAST AND HEARTR01AG015709 · NIA · YALE UNIVERSITY · PI ISAYA, GRAZIA · 1997 to 2015
$4.0M
Ferrochelatase: dose porphyrin distortion control metal ion specificity?R01GM080270 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI FERREIRA, GLORIA C. · 2007 to 2010
$916k
NIA NIH HHS R01 AG015709NIGMS NIH HHS R01 GM080270
6 · The paper itself

Abstract

Frataxin is a mitochondrial iron-binding protein involved in iron storage, detoxification, and delivery for iron sulfur-cluster assembly and heme biosynthesis. The ability of frataxin from different organisms to populate multiple oligomeric states in the presence of metal ions, e.g. Fe(2+) and Co(2+), led to the suggestion that different oligomers contribute to the functions of frataxin. Here we report on the complex between yeast frataxin and ferrochelatase, the terminal enzyme of heme biosynthesis. Protein-protein docking and cross-linking in combination with mass spectroscopic analysis and single-particle reconstruction from negatively stained electron microscopic images were used to verify the Yfh1-ferrochelatase interactions. The model of the complex indicates that at the 2:1 Fe(2+)-to-protein ratio, when Yfh1 populates a trimeric state, there are two interaction interfaces between frataxin and the ferrochelatase dimer. Each interaction site involves one ferrochelatase monomer and one frataxin trimer, with conserved polar and charged amino acids of the two proteins positioned at hydrogen-bonding distances from each other. One of the subunits of the Yfh1 trimer interacts extensively with one subunit of the ferrochelatase dimer, contributing to the stability of the complex, whereas another trimer subunit is positioned for Fe(2+) delivery. Single-turnover stopped-flow kinetics experiments demonstrate that increased rates of heme production result from monomers, dimers, and trimers, indicating that these forms are most efficient in delivering Fe(2+) to ferrochelatase and sustaining porphyrin metalation. Furthermore, they support the proposal that frataxin-mediated delivery of this potentially toxic substrate overcomes formation of reactive oxygen species.

Indexed as

Crystallography, X-RayFerrochelataseFrataxinHemeIronIron-Binding ProteinsKineticsModels, MolecularProtein BindingProtein ConformationSaccharomyces cerevisiaeSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationFerrochelataseFrataxinHemeIronIron-Binding ProteinsataxiaferrochelatasefrataxinFriedreich ataxiahemeiron chaperoneiron-sulfur proteiniron traffickingmitochondriaprotoporphyrin

Identifiers

PMID27026703
PMCPMC4882455
OpenAlexW2318653168

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.