Evidence map›Paper›PMID 27025970›Full record

ArticleJournal of the American Heart Association2016

Identification of PTCSC3 as a Novel Locus for Large-Vessel Ischemic Stroke: A Genome-Wide Association Study.

Tsong-Hai Lee, Tai-Ming Ko, Chien-Hsiun Chen, Ming-Ta Michael Lee, Yeu-Jhy Chang, Chien-Hung Chang, Kuo-Lun Huang, Ting-Yu Chang, Jiann-Der Lee, Ku-Chou Chang and 14 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Journal of the American Heart Association, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 3 countries.

Tsong-Hai LeeChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Tai-Ming KoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan Graduate Institute of Integrated Medicine, College of Chinese Medicine, China Medical University, Taichung, Taiwan.
Chien-Hsiun ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan School of Chinese Medicine, China Medical University, Taichung, Taiwan.
Ming-Ta Michael LeeInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan Laboratory for International Alliance on Genomic Research, Core for Genomic Medicine, RIKEN Center for Integrative Medical Sciences, Kanagawa, Japan.
Yeu-Jhy ChangChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Chien-Hung ChangChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Kuo-Lun HuangChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Ting-Yu ChangChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Jiann-Der LeeChang Gung Memorial Hospital, Chiayi Branch, Chang Gung University College of Medicine, Chiayi, Taiwan.
Ku-Chou ChangChang Gung Memorial Hospital, Kaohsiung Medical Center, Chang Gung University College of Medicine, Kaohsiung, Taiwan.
Jen-Tsung YangChang Gung Memorial Hospital, Chiayi Branch, Chang Gung University College of Medicine, Chiayi, Taiwan.
Ming-Shien WenChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Chao-Yung WangChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Ying-Ting ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chia-San HsiehInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Shu-Yu ChouChang Gung Memorial Hospital, Linkou Medical Center, Chang Gung University College of Medicine, Taoyuan, Taiwan.
Yi-Min LiuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Hui-Wen ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Hung-Ting LiaoInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Chia-Wen WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Shih-Ping ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Liang-Suei LuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan.
Yuan-Tsong ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan Department of Pediatrics, Duke University Medical Center, Durham, NC chen0010@ibms.sinica.edu.tw jywu@ibms.sinica.edu.tw.
Jer-Yuarn WuInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan School of Chinese Medicine, China Medical University, Taichung, Taiwan chen0010@ibms.sinica.edu.tw jywu@ibms.sinica.edu.tw.
Institute of Biomedical Sciences, Academia Sinica · TWChang Gung University · TWLinkou Chang Gung Memorial Hospital · TWChiayi Chang Gung Memorial Hospital · TWChina Medical University · TWDuke Medical Center · USRIKEN Center for Integrative Medical Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIschemic stroke is a major cause of death and disability in the world. A major ischemic stroke subtype, large-vessel ischemic stroke (large artery atherosclerosis; LAA), has been shown to have some genetic components in individuals of European ancestry. However, it is not clear whether the genetic predisposition to LAA stroke varies among ethnicities. We sought to identify genetic factors that contribute to LAA stroke in 2 independent samples of Han Chinese individuals. METHODS AND

resultsNovel genetic variants that predispose individuals to LAA stroke were identified using a genome-wide association study (GWAS) of 444 individuals with LAA stroke and 1727 controls in a Han Chinese population residing in Taiwan. The study was replicated in an independent Han Chinese population comprising an additional 319 cases and 1802 controls. We identified 5 single-nucleotide polymorphisms, including rs2415317 (P=3.10×10(-8)), rs934075 (P=4.00×10(-9)), rs944289 (P=3.57×10(-8)), rs2787417 (P=1.76×10(-8)), and rs1952706 (P=2.92×10(-8)), at one novel locus on chromosome 14q13.3 within PTCSC3 (encoding papillary thyroid carcinoma susceptibility candidate 3) that were associated with LAA stroke at genome-wide significance (P<5×10(-8)).

conclusionsOur data provide strong support for future studies on the role of PTCSC3 in the pathogenesis of LAA stroke and the association between LAA stroke development and thyroid function. In addition, these findings provide insights into the genetic basis of LAA stroke and identify a novel pathway that might be applicable for future therapeutic intervention.

Indexed as

Polymorphism, Single NucleotideAgedAsian PeopleBrain IschemiaCase-Control StudiesChinaFemaleGenetic MarkersGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMaleMiddle AgedPhenotypeRisk FactorsRNA, UntranslatedGenetic MarkersPtcsc3 untranslated RNA, humanRNA, Untranslatedatherosclerosisgenome‐wide association studynon‐coding RNApolymorphismstroke

Identifiers

PMID27025970
PMCPMC4943273
OpenAlexW2324388041

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.