Evidence map›Paper›PMID 27025684›Full record

ArticleNature communications2016

Towards repurposing the yeast peroxisome for compartmentalizing heterologous metabolic pathways.

William C DeLoache, Zachary N Russ, John E Dueber

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 197 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Protein Targeting Signals and Strategies for Pichia pastoris.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  7. Article
  8. A peroxisomal membrane protein hub.Nature chemical biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Biodesign research · 2025
    Article
  14. Article
  15. PEX1The Journal of biological chemistry · 2025
    Article
  16. Review
  17. Article
  18. Evolutionary engineering ofScience advances · 2024
    Article
  19. Review
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

William C DeLoacheUC Berkeley and UCSF Graduate Program in Bioengineering, University of California, Berkeley (UC Berkeley), Berkeley, California 94720, USA.
Zachary N RussUC Berkeley and UCSF Graduate Program in Bioengineering, University of California, Berkeley (UC Berkeley), Berkeley, California 94720, USA.ORCID http://orcid.org/0000-0002-0571-8252
John E DueberDepartment of Bioengineering, UC Berkeley, Berkeley, California 94720, USA.
Berkeley College · USUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compartmentalization of enzymes into organelles is a promising strategy for limiting metabolic crosstalk and improving pathway efficiency, but improved tools and design rules are needed to make this strategy available to more engineered pathways. Here we focus on the Saccharomyces cerevisiae peroxisome and develop a sensitive high-throughput assay for peroxisomal cargo import. We identify an enhanced peroxisomal targeting signal type 1 (PTS1) for rapidly sequestering non-native cargo proteins. Additionally, we perform the first systematic in vivo measurements of nonspecific metabolite permeability across the peroxisomal membrane using a polymer exclusion assay. Finally, we apply these new insights to compartmentalize a two-enzyme pathway in the peroxisome and characterize the expression regimes where compartmentalization leads to improved product titre. This work builds a foundation for using the peroxisome as a synthetic organelle, highlighting both promise and future challenges on the way to realizing this goal.

Indexed as

Cell CompartmentationMetabolic Networks and PathwaysAmino AcidsBiological AssayCell MembraneCytosolEnzyme-Linked Immunosorbent AssayMetabolomeOligosaccharidesPermeabilityPeroxisomesProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmino AcidsOligosaccharidesSaccharomyces cerevisiae Proteins

Identifiers

PMID27025684
PMCPMC5476825
OpenAlexW2324868592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.